Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_G06
         (470 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006770-1|AAF60594.1| 1365|Caenorhabditis elegans Hypothetical ...    46   1e-05
AF040649-6|AAB95006.1| 1360|Caenorhabditis elegans Hypothetical ...    43   1e-04
AF025472-7|AAB71069.1| 1466|Caenorhabditis elegans Hypothetical ...    43   1e-04
AC024749-1|AAF60434.1| 1466|Caenorhabditis elegans Hypothetical ...    43   1e-04
AC006648-1|AAF39854.1| 1486|Caenorhabditis elegans Hypothetical ...    43   1e-04
AF101304-2|AAN60536.1| 1123|Caenorhabditis elegans Hypothetical ...    33   0.078
AF101304-1|AAC69200.2| 1121|Caenorhabditis elegans Hypothetical ...    33   0.078
Z81499-1|CAB04087.1|  471|Caenorhabditis elegans Hypothetical pr...    29   1.7  
Z81516-6|CAB04206.1|  524|Caenorhabditis elegans Hypothetical pr...    27   6.8  
Z78410-1|CAB01638.2|  330|Caenorhabditis elegans Hypothetical pr...    27   6.8  
Z75535-5|CAA99829.1|  524|Caenorhabditis elegans Hypothetical pr...    27   6.8  
Z46935-10|CAA87054.1| 1244|Caenorhabditis elegans Hypothetical p...    27   6.8  
Z46794-13|CAA86786.1| 1244|Caenorhabditis elegans Hypothetical p...    27   6.8  
U96387-1|AAC47834.1| 1244|Caenorhabditis elegans mitotic chromos...    27   6.8  
AL031266-2|CAA20330.1| 1244|Caenorhabditis elegans Hypothetical ...    27   6.8  
X56212-1|CAA39669.1| 1613|Caenorhabditis elegans vitellogenin pr...    27   9.0  

>AC006770-1|AAF60594.1| 1365|Caenorhabditis elegans Hypothetical
            protein Y46B2A.2 protein.
          Length = 1365

 Score = 46.0 bits (104), Expect = 1e-05
 Identities = 22/50 (44%), Positives = 29/50 (58%)
 Frame = -3

Query: 330  SFAMTINKAHSQTLKVVDLDLSISCFSHGQLYVASSHVNNPSSLYAMFSN 181
            SFA++INKA  Q+   + L +    F+HGQLYVA S V     L   FS+
Sbjct: 1304 SFALSINKAQGQSFSKIGLWIPTDVFTHGQLYVALSRVRTKEGLIVKFSS 1353


>AF040649-6|AAB95006.1| 1360|Caenorhabditis elegans Hypothetical
            protein F33H12.6 protein.
          Length = 1360

 Score = 42.7 bits (96), Expect = 1e-04
 Identities = 21/50 (42%), Positives = 28/50 (56%)
 Frame = -3

Query: 330  SFAMTINKAHSQTLKVVDLDLSISCFSHGQLYVASSHVNNPSSLYAMFSN 181
            SFA++INKA  Q+   + L +    F+HGQLYVA S V     L    S+
Sbjct: 1299 SFALSINKAQGQSFSKIGLWIPTDVFTHGQLYVALSRVRTKEGLIVKSSS 1348


>AF025472-7|AAB71069.1| 1466|Caenorhabditis elegans Hypothetical
            protein ZK250.9 protein.
          Length = 1466

 Score = 42.7 bits (96), Expect = 1e-04
 Identities = 21/50 (42%), Positives = 28/50 (56%)
 Frame = -3

Query: 330  SFAMTINKAHSQTLKVVDLDLSISCFSHGQLYVASSHVNNPSSLYAMFSN 181
            SFA++INKA  Q+   + L +    F+HGQLYVA S V     L    S+
Sbjct: 1405 SFALSINKAQGQSFSKIGLWIPTDVFTHGQLYVALSRVRTKEGLIVKSSS 1454


>AC024749-1|AAF60434.1| 1466|Caenorhabditis elegans Hypothetical
            protein Y16E11A.2 protein.
          Length = 1466

 Score = 42.7 bits (96), Expect = 1e-04
 Identities = 21/50 (42%), Positives = 28/50 (56%)
 Frame = -3

Query: 330  SFAMTINKAHSQTLKVVDLDLSISCFSHGQLYVASSHVNNPSSLYAMFSN 181
            SFA++INKA  Q+   + L +    F+HGQLYVA S V     L    S+
Sbjct: 1405 SFALSINKAQGQSFSKIGLWIPTDVFTHGQLYVALSRVRTKEGLIVKSSS 1454


>AC006648-1|AAF39854.1| 1486|Caenorhabditis elegans Hypothetical
            protein F59H6.5 protein.
          Length = 1486

 Score = 42.7 bits (96), Expect = 1e-04
 Identities = 21/50 (42%), Positives = 28/50 (56%)
 Frame = -3

Query: 330  SFAMTINKAHSQTLKVVDLDLSISCFSHGQLYVASSHVNNPSSLYAMFSN 181
            SFA++INKA  Q+   + L +    F+HGQLYVA S V     L    S+
Sbjct: 1425 SFALSINKAQGQSFSKIGLWIPTDVFTHGQLYVALSRVRTKEGLIVKSSS 1474


>AF101304-2|AAN60536.1| 1123|Caenorhabditis elegans Hypothetical
           protein C02E11.1b protein.
          Length = 1123

 Score = 33.5 bits (73), Expect = 0.078
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = -3

Query: 270 LSISCFSHGQLYVASSHVNNPSSL 199
           LS++C   G+ Y+A+SHVN P S+
Sbjct: 258 LSVACVPSGEYYLAASHVNGPKSI 281


>AF101304-1|AAC69200.2| 1121|Caenorhabditis elegans Hypothetical
           protein C02E11.1a protein.
          Length = 1121

 Score = 33.5 bits (73), Expect = 0.078
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = -3

Query: 270 LSISCFSHGQLYVASSHVNNPSSL 199
           LS++C   G+ Y+A+SHVN P S+
Sbjct: 256 LSVACVPSGEYYLAASHVNGPKSI 279


>Z81499-1|CAB04087.1|  471|Caenorhabditis elegans Hypothetical
           protein F11C3.1 protein.
          Length = 471

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -3

Query: 330 SFAMTINKAHSQTLKVVDLDLSISCFSHGQLYVASSHV 217
           +FA TI+ +  ++ + + L     CF HG +Y A S V
Sbjct: 410 NFASTIHGSQGKSFEKLGLYKLNECFEHGMIYTAISRV 447


>Z81516-6|CAB04206.1|  524|Caenorhabditis elegans Hypothetical
           protein F26H9.1 protein.
          Length = 524

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
 Frame = +3

Query: 30  PYQLVCIILT---YLLLA-VPTTSSAWNSDFGQHFLDVSFGLFWII 155
           PY  V  ILT   Y LL+ +  TSS WN   G +    +F   W++
Sbjct: 123 PYDAVIHILTRTPYNLLSRMVMTSSCWNQTIGAYMRSGAFRRRWLL 168


>Z78410-1|CAB01638.2|  330|Caenorhabditis elegans Hypothetical
           protein C51E3.1 protein.
          Length = 330

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +3

Query: 39  LVCIILTYLLLAVPTTSSAWNSDFGQHFLDVSFGLF-WIIITVVTSYSH 182
           L   I  Y+LL    TSS + + F    + VSF LF W   T+  + S+
Sbjct: 182 LFVYIKVYVLLKFNKTSSRFKAVFRSILVTVSFVLFGWATTTIANAASY 230


>Z75535-5|CAA99829.1|  524|Caenorhabditis elegans Hypothetical
           protein F26H9.1 protein.
          Length = 524

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
 Frame = +3

Query: 30  PYQLVCIILT---YLLLA-VPTTSSAWNSDFGQHFLDVSFGLFWII 155
           PY  V  ILT   Y LL+ +  TSS WN   G +    +F   W++
Sbjct: 123 PYDAVIHILTRTPYNLLSRMVMTSSCWNQTIGAYMRSGAFRRRWLL 168


>Z46935-10|CAA87054.1| 1244|Caenorhabditis elegans Hypothetical
           protein M106.1 protein.
          Length = 1244

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 163 TVIIIQNKPKDTSKKCCPKSLFHADEVV 80
           T  I+Q +  +T K+C P  + H DE+V
Sbjct: 71  TKAIVQVRFDNTDKRCSPFGMEHLDEIV 98


>Z46794-13|CAA86786.1| 1244|Caenorhabditis elegans Hypothetical
           protein M106.1 protein.
          Length = 1244

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 163 TVIIIQNKPKDTSKKCCPKSLFHADEVV 80
           T  I+Q +  +T K+C P  + H DE+V
Sbjct: 71  TKAIVQVRFDNTDKRCSPFGMEHLDEIV 98


>U96387-1|AAC47834.1| 1244|Caenorhabditis elegans mitotic chromosome
           and X-chromosomeassociated MIX-1 protein protein.
          Length = 1244

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 163 TVIIIQNKPKDTSKKCCPKSLFHADEVV 80
           T  I+Q +  +T K+C P  + H DE+V
Sbjct: 71  TKAIVQVRFDNTDKRCSPFGMEHLDEIV 98


>AL031266-2|CAA20330.1| 1244|Caenorhabditis elegans Hypothetical
           protein M106.1 protein.
          Length = 1244

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 163 TVIIIQNKPKDTSKKCCPKSLFHADEVV 80
           T  I+Q +  +T K+C P  + H DE+V
Sbjct: 71  TKAIVQVRFDNTDKRCSPFGMEHLDEIV 98


>X56212-1|CAA39669.1| 1613|Caenorhabditis elegans vitellogenin
           protein.
          Length = 1613

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = -3

Query: 342 ELMTSFAMTINKAHSQTLKVVDLDLSISCFSHGQLYVASSHVNNPSSLYAMFS 184
           +++  FAM+ N  + +   V    LS + +   +  +ASS+V  P  L   FS
Sbjct: 615 QMIRHFAMSTNPCYQRVAIVCSKVLSFTRYQPQEQMIASSYVQLPRFLQNSFS 667


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,389,067
Number of Sequences: 27780
Number of extensions: 214359
Number of successful extensions: 536
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 536
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 850313440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)