Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_G06
         (470 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    28   0.058
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    28   0.058
DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              22   3.8  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   5.0  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   5.0  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   5.0  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   6.7  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   6.7  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    21   8.8  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 27.9 bits (59), Expect = 0.058
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +3

Query: 39  LVCIILTYLLLAVPTTSSAWNSDFG 113
           LVC + T+LLLA PTT +     FG
Sbjct: 562 LVCYLNTFLLLATPTTVTCILQRFG 586


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 27.9 bits (59), Expect = 0.058
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +3

Query: 39  LVCIILTYLLLAVPTTSSAWNSDFG 113
           LVC + T+LLLA PTT +     FG
Sbjct: 652 LVCYLNTFLLLATPTTVTCILQRFG 676


>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -1

Query: 221 MLIILAACMLCSPMAIRC 168
           +L +L  C++CSP ++ C
Sbjct: 6   LLSLLITCLICSP-SVHC 22


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -1

Query: 239 FMWLRHMLIILAACMLCSPMAIRCNDGDYNPK 144
           F W   ML++L A ++  P+AI   + D + +
Sbjct: 89  FYWDLCMLLLLVANLIILPVAISFFNDDLSTR 120


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -1

Query: 239 FMWLRHMLIILAACMLCSPMAIRCNDGDYNPK 144
           F W   ML++L A ++  P+AI   + D + +
Sbjct: 89  FYWDLCMLLLLVANLIILPVAISFFNDDLSTR 120


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -1

Query: 239 FMWLRHMLIILAACMLCSPMAIRCNDGDYNPK 144
           F W   ML++L A ++  P+AI   + D + +
Sbjct: 89  FYWDLCMLLLLVANLIILPVAISFFNDDLSTR 120


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +1

Query: 415 LSPVKISAFTHVLIN 459
           LSP+ ++  TH+L N
Sbjct: 11  LSPLTLNRITHILAN 25


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +1

Query: 415 LSPVKISAFTHVLIN 459
           LSP+ ++  TH+L N
Sbjct: 49  LSPLTLNRITHILAN 63


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 20.6 bits (41), Expect = 8.8
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +1

Query: 379 LYGMRGTRGIHTLS 420
           L+G+ G  G+H LS
Sbjct: 134 LHGLHGLHGLHGLS 147


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,466
Number of Sequences: 438
Number of extensions: 2751
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12682287
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)