Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_G05
         (404 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ...    26   1.9  
SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|...    26   2.6  
SPAC19A8.03 |||phosphatidylinositol-3-phosphatase |Schizosacchar...    24   7.8  
SPCC613.09 |sen54||tRNA-splicing endonuclease subunit Sen54 |Sch...    24   7.8  
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    24   7.8  

>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 615

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 163 RFTEFSFITYFLCVFVLNTY 222
           R   F+   Y+LC+ VL TY
Sbjct: 582 RLNRFTMFIYYLCILVLATY 601


>SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 521

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 23  YCNIFYSRIITFDNFYKQKIYSLIETEFITSLI 121
           Y ++ ++ +ITF N Y   I+      FITS I
Sbjct: 459 YASLIFTGLITFFNGYNAFIHGFKYRSFITSYI 491


>SPAC19A8.03 |||phosphatidylinositol-3-phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 559

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
 Frame = +1

Query: 175 FSFITYFLCVFVLNTYLKFW**VYFQIYDEAN*VIVTALTCFQFTKWLL---LYHIYNLK 345
           FS +   L  F ++   K    V+ Q  D    ++     CF+F +  L   LYH+Y+ +
Sbjct: 421 FSTVRSALSGFSIDHSEKMMSPVFHQFLDCVWQIMDQFPNCFEFNERFLRRLLYHLYSCQ 480

Query: 346 YSIIMF 363
           Y   ++
Sbjct: 481 YGSFLY 486


>SPCC613.09 |sen54||tRNA-splicing endonuclease subunit Sen54
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 384

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -2

Query: 133 GILKYKRCDKFCFNQRIYLLFIK 65
           G++ Y R    CF +++Y  F K
Sbjct: 346 GVISYIRLSDVCFEEKVYTDFSK 368


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +2

Query: 38  YSRIITFDNFYKQKIYSLIETEFITSLIFQN 130
           +SRI + DN Y+QK   ++E    TS I +N
Sbjct: 787 FSRIGSADNLYQQKSTFMVEM-METSFILKN 816


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,474,711
Number of Sequences: 5004
Number of extensions: 26344
Number of successful extensions: 64
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)