Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_G04
         (475 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein S19|Schizosac...   152   3e-38
SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein S19|Sch...   151   7e-38
SPBC19G7.06 |mbx1||MADS-box transcription factor Mbx1|Schizosacc...    26   3.4  
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    26   3.4  
SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyce...    25   5.9  
SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha...    25   7.8  
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    25   7.8  

>SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein
           S19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 144

 Score =  152 bits (368), Expect = 3e-38
 Identities = 70/135 (51%), Positives = 93/135 (68%)
 Frame = +3

Query: 24  MRSVTVKDVEQDKIVKTVAAHLKKIGKVKVPDHMDLVKTARFKELAPYDPDWFYVRCAAI 203
           M  V+VKDV+  K +   AA LK+ GK+  P  +D+VKT   KELAPYDPDW+YVR AAI
Sbjct: 1   MAGVSVKDVDAQKFITAYAAFLKRSGKMTTPQWIDIVKTGTHKELAPYDPDWYYVRAAAI 60

Query: 204 LRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQALEALKLVEKVQDGG 383
            RHIY+R  VGV  + K++GG    G+ PSH    SGS+ RK +Q+LE + ++EK  +GG
Sbjct: 61  ARHIYLRKQVGVGRLCKVYGGSVNRGMRPSHHRDGSGSVQRKVVQSLEKIGVLEKSDNGG 120

Query: 384 RILTTQARRDLDRIA 428
           R ++ Q +RDLDRIA
Sbjct: 121 RRISQQGQRDLDRIA 135


>SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein
           S19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score =  151 bits (365), Expect = 7e-38
 Identities = 69/135 (51%), Positives = 93/135 (68%)
 Frame = +3

Query: 24  MRSVTVKDVEQDKIVKTVAAHLKKIGKVKVPDHMDLVKTARFKELAPYDPDWFYVRCAAI 203
           M  V+VKDV+  + +   AA LK+ GK+  P  +D+VKT   KELAPYDPDW+YVR AAI
Sbjct: 1   MAGVSVKDVDAQQFINAYAAFLKRSGKMTTPQWIDIVKTGTHKELAPYDPDWYYVRAAAI 60

Query: 204 LRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQALEALKLVEKVQDGG 383
            RHIY+R  VGV  + K++GG    G+ PSH    SGS+ RK +Q+LE + ++EK  +GG
Sbjct: 61  ARHIYLRKQVGVGRLCKVYGGSVNRGMRPSHHRDGSGSVQRKVVQSLEKIGVLEKSDNGG 120

Query: 384 RILTTQARRDLDRIA 428
           R ++ Q +RDLDRIA
Sbjct: 121 RRISQQGQRDLDRIA 135


>SPBC19G7.06 |mbx1||MADS-box transcription factor
           Mbx1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +3

Query: 12  TQGKMRSVTVKDVEQDKIVKTVAAHLKKIGKVKVPDH 122
           ++   +S T+K         T A+  KKI  + +PDH
Sbjct: 116 SENDFQSFTIKSSTTYHTTPTTASENKKIESITIPDH 152


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 246 QS*LQQESGYRCDAV*QHSVHKTNQGHR 163
           QS  +++SGY  D V   S H+T + HR
Sbjct: 90  QSFQREDSGYNDDVVTNSSSHRTPRHHR 117


>SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 473

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 11/42 (26%), Positives = 24/42 (57%)
 Frame = +3

Query: 18  GKMRSVTVKDVEQDKIVKTVAAHLKKIGKVKVPDHMDLVKTA 143
           G+ + V   D+E +K+++    HL  +  +K+   +D++ TA
Sbjct: 224 GEDKMVKCWDLETNKVIRHYHGHLSGVYALKLHPTLDVLVTA 265


>SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase
           Wis1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 605

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -2

Query: 111 PSLCRSFSSERLQF*RFCLVQHPSL 37
           PSL  SFS E   F   CL ++PSL
Sbjct: 542 PSLPDSFSPEARDFVNKCLNKNPSL 566


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 18/48 (37%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
 Frame = +3

Query: 84  HLKKIGKVKVPDHMDLVKTAR--FKELAPYDPDWFYVRCAAILRHIYI 221
           H K   K   P H D  KT+R   KE  P  P   Y R  +  R  YI
Sbjct: 627 HAKSFSKYYSPSHKDSNKTSRNTSKEGLPSSPTMLY-RTTSNTRGDYI 673


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,912,756
Number of Sequences: 5004
Number of extensions: 36316
Number of successful extensions: 112
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)