Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_G03
(425 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0102 + 8414109-8414505,8416172-8416227 33 0.13
02_05_0023 + 25138709-25138823,25139013-25139197,25139268-251393... 31 0.39
12_02_0797 - 23230441-23230757,23230922-23231069,23231352-232325... 30 0.90
09_06_0097 + 20845417-20845518,20845728-20846581,20846666-208467... 29 1.2
11_08_0086 + 28268227-28270008 29 1.6
02_05_0109 - 25909126-25909308,25909454-25909660,25910130-259103... 28 2.7
02_04_0013 - 18910009-18910056,18910154-18910282,18910373-189104... 28 2.7
05_01_0488 - 4070506-4072277,4072455-4072557 27 4.8
06_03_0615 - 22761375-22761760,22762218-22765026 27 6.3
10_01_0097 - 1171949-1172047,1172520-1172591,1172791-1172949,117... 27 8.3
05_01_0547 - 4774320-4776089,4776823-4777028,4777563-4777818 27 8.3
01_06_1501 + 37804029-37804600,37804626-37805388 27 8.3
01_01_0592 + 4414416-4415132 27 8.3
>05_03_0102 + 8414109-8414505,8416172-8416227
Length = 150
Score = 32.7 bits (71), Expect = 0.13
Identities = 21/89 (23%), Positives = 42/89 (47%)
Frame = +2
Query: 149 QDLEKHAQDFQKTISEQFNAIVNSKNTESLNKALKEGSDSMVQQVSELSNSLQGALTDAN 328
+D+E+ + + Q+NA+ + L + + D++ + ELS + + D
Sbjct: 8 EDVEEDGNNNEPITRLQYNAL-----RDVLRREMNSRMDTLEGRTDELSQKFEKTIQDFE 62
Query: 329 GKAKEVLQQARQNLERTVEDLRNAHPDVE 415
+ ++Q RQN+ + +E L PDVE
Sbjct: 63 VQVNNNMEQLRQNIVQDLEHL--LRPDVE 89
>02_05_0023 +
25138709-25138823,25139013-25139197,25139268-25139335,
25139729-25140041,25140621-25140962,25140990-25141079
Length = 370
Score = 31.1 bits (67), Expect = 0.39
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = -2
Query: 421 LFLDVGVRIAEILDCALQVLASLLEHFLSFTVCVGQ 314
L L +GV IA + D L +L S+L T CVGQ
Sbjct: 131 LILLLGVGIASVTDLKLNLLGSVLSGLAIATTCVGQ 166
>12_02_0797 -
23230441-23230757,23230922-23231069,23231352-23232562,
23232639-23232894,23234073-23234309
Length = 722
Score = 29.9 bits (64), Expect = 0.90
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Frame = +2
Query: 152 DLEKHAQDFQKTISEQFNAIVNSK-NTESLNKALKEGSDSMVQQVSELSNSLQGALTDAN 328
DL+ Q FQ ++SE+ + ++K ++S N + + +++ + S SLQ
Sbjct: 106 DLQAAIQRFQPSLSEKPPSKRSNKLRSDSSNSGSQHAASLVLEAIYLKSMSLQKL----- 160
Query: 329 GKAKEVLQQARQNLERTVEDLRNAHPDV 412
GKA E QQ R L+ + PDV
Sbjct: 161 GKAVEAAQQCRSVLDAVESIFQRGIPDV 188
>09_06_0097 +
20845417-20845518,20845728-20846581,20846666-20846726,
20847320-20847358,20847602-20847682
Length = 378
Score = 29.5 bits (63), Expect = 1.2
Identities = 19/63 (30%), Positives = 32/63 (50%)
Frame = +2
Query: 236 LNKALKEGSDSMVQQVSELSNSLQGALTDANGKAKEVLQQARQNLERTVEDLRNAHPDVE 415
L LKE + +++Q +L SLQ L +A+ K + + +E+ E+L VE
Sbjct: 25 LEAVLKEEEEDLLKQEEQLKQSLQ-ELFEAHATVKARIDKVHTQVEKDEEELEKLRL-VE 82
Query: 416 KQA 424
+QA
Sbjct: 83 RQA 85
>11_08_0086 + 28268227-28270008
Length = 593
Score = 29.1 bits (62), Expect = 1.6
Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Frame = +2
Query: 143 ILQDLEKHAQDFQKTISEQFNAIVNSKNTESLNKALKEGSDSMVQQVS-ELSNSLQGALT 319
+L +L HA + E+ ++++ + +NK K+GS S V + L Q T
Sbjct: 167 LLDELMLHAHETCIKDMEKLRIDMDNEAEKKINKKDKKGSSSKVVDLRLLLIQCAQATAT 226
Query: 320 DANGKAKEVLQQARQNLERTVEDL-RNAH 403
D A E+L++ +Q+ T + + R AH
Sbjct: 227 DNQQSAGELLKKIKQHALATGDAMQRVAH 255
>02_05_0109 -
25909126-25909308,25909454-25909660,25910130-25910336,
25910411-25910459,25911005-25911204,25911275-25911360,
25911441-25911597,25911808-25911972,25913254-25913490
Length = 496
Score = 28.3 bits (60), Expect = 2.7
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Frame = +2
Query: 209 IVNSKNTESLNKALKEGSDSMV-QQVSELSNSLQGALTDANGKAKEVLQQARQNLERTVE 385
+++ K+ E L KAL+E SD+++ +++ + S L G L G VLQ R + + V+
Sbjct: 370 LLHDKSEEKL-KALREISDTVMHRKLLDSSVDLVGKLLFGFGNGPSVLQAVRPSGQPLVD 428
Query: 386 D 388
D
Sbjct: 429 D 429
>02_04_0013 -
18910009-18910056,18910154-18910282,18910373-18910420,
18910532-18910594,18910675-18910713,18912107-18912180,
18913014-18913072,18913265-18913324,18913466-18913590,
18914054-18914112,18914356-18914419,18914516-18914569,
18914727-18914765,18916135-18916275
Length = 333
Score = 28.3 bits (60), Expect = 2.7
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = +2
Query: 224 NTESLNKALKEGSDSMVQQVSELSNSLQGALTDANGKAKEVL 349
N E+L KAL+EG + + ++ L S + L NG++K VL
Sbjct: 73 NFENLEKALEEGGE-LYEKTVYLFGSTEPQLLGVNGESKIVL 113
>05_01_0488 - 4070506-4072277,4072455-4072557
Length = 624
Score = 27.5 bits (58), Expect = 4.8
Identities = 23/98 (23%), Positives = 45/98 (45%), Gaps = 7/98 (7%)
Frame = +2
Query: 131 APNTILQDLEKHAQDFQKTISEQFNAIVNSKNTESLNKALKEGSDSMVQQVSEL------ 292
+P++ +DL++ QK S+ F+ + S + ++K +GS S + EL
Sbjct: 110 SPSSPERDLQEKMSQKQKPRSDCFDVSIGSGMSSDVSKKGSDGSSSSSESDLELDEAKEE 169
Query: 293 -SNSLQGALTDANGKAKEVLQQARQNLERTVEDLRNAH 403
NS+ AL+ + ++ L + R L+ + E H
Sbjct: 170 NGNSIFYALSQKIIELEDELHEVRGKLDASEEKNMRCH 207
>06_03_0615 - 22761375-22761760,22762218-22765026
Length = 1064
Score = 27.1 bits (57), Expect = 6.3
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Frame = +2
Query: 110 GAMVRRDAPNTILQDLEKHAQDFQKTISEQFNAIVNSKNTE-SLNKALKE-----GSDSM 271
GA+ A T+L+ L+ H F I QF ++N + + S+NK E G+ S
Sbjct: 494 GALPGELANITVLELLDVHNNSFTGAIPPQFGELMNLEQLDLSMNKLTGEIPASFGNFSY 553
Query: 272 VQQVSELSNSLQGAL 316
+ ++ N L G L
Sbjct: 554 LNKLILSGNMLSGTL 568
>10_01_0097 -
1171949-1172047,1172520-1172591,1172791-1172949,
1172998-1173381,1173478-1175253,1175329-1175452,
1176859-1177027,1177131-1177226,1177339-1177527,
1177965-1179303
Length = 1468
Score = 26.6 bits (56), Expect = 8.3
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = +2
Query: 248 LKEGSDSMVQQVSELSNSLQGALTDANGKAKEVLQQARQNLERTVEDL 391
LK+ + +QVS N+ + T A G EVLQ QNL RT+ L
Sbjct: 745 LKKLAPESYKQVS--GNTSNSSETVAAGSIDEVLQSMDQNLFRTLPKL 790
>05_01_0547 - 4774320-4776089,4776823-4777028,4777563-4777818
Length = 743
Score = 26.6 bits (56), Expect = 8.3
Identities = 16/66 (24%), Positives = 28/66 (42%)
Frame = +2
Query: 137 NTILQDLEKHAQDFQKTISEQFNAIVNSKNTESLNKALKEGSDSMVQQVSELSNSLQGAL 316
+ +L LE+ S+ I N N+ + + +++SE+ S +GAL
Sbjct: 385 DNLLNQLEEKLSAALSDTSKNKIIIAELNNELDTNRTMLDNEAEAHKKLSEILQSTEGAL 444
Query: 317 TDANGK 334
TD K
Sbjct: 445 TDYRDK 450
>01_06_1501 + 37804029-37804600,37804626-37805388
Length = 444
Score = 26.6 bits (56), Expect = 8.3
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +1
Query: 211 RQLKEHGEL-EQSTEGRLRLHGAAGLRVIQQSTGCVD 318
R L HG++ ++T R R H A RV+ CVD
Sbjct: 129 RLLARHGDVPRRATRPRRRRHPRAARRVVLLGCACVD 165
>01_01_0592 + 4414416-4415132
Length = 238
Score = 26.6 bits (56), Expect = 8.3
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +1
Query: 22 GNFASNSHRLRHRHGRQVLRVVRLR 96
G+ A+ +HR R GR+ +R V +R
Sbjct: 154 GSLAAGAHRAASRRGRRAVRAVHVR 178
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,638,742
Number of Sequences: 37544
Number of extensions: 190499
Number of successful extensions: 764
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 790518168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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