Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_G01
(505 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0039 - 319871-319914,320021-320084,320198-320263,320397-32... 38 0.003
11_01_0040 - 304439-304482,304589-304652,304766-304831,305509-30... 38 0.005
01_06_0250 + 27876358-27879261 33 0.17
06_03_1357 + 29543922-29545058,29545632-29545784,29545904-29546050 31 0.40
05_01_0264 + 2030080-2031270 29 1.6
01_02_0051 - 10655867-10657057 29 2.1
02_02_0220 - 7992124-7992351,7992458-7992562,7993499-7993711,799... 29 2.8
10_02_0150 - 5883942-5884328,5884573-5884677,5885219-5885311,588... 28 3.7
08_01_1029 - 10419090-10419476,10419721-10419822,10420367-104204... 28 3.7
06_03_1065 - 27316270-27317032,27317062-27317189 28 3.7
03_05_0883 + 28483429-28484385,28485090-28485398 27 8.6
>12_01_0039 -
319871-319914,320021-320084,320198-320263,320397-320458,
321211-321298,321401-321461,321542-321625,322332-322630
Length = 255
Score = 38.3 bits (85), Expect = 0.003
Identities = 19/53 (35%), Positives = 29/53 (54%)
Frame = +3
Query: 261 NLYLKRSYEYLLSASYFNNYKINRAGFSKMFRKLSDEAWEKAIDLIKHVTMRG 419
N+ SY Y +YF+ + GF+K F++ SDE + A L+K+ MRG
Sbjct: 100 NVEFNASYAYHSLFAYFDRDNVALKGFAKFFKESSDEERDHAEKLMKYQNMRG 152
>11_01_0040 -
304439-304482,304589-304652,304766-304831,305509-305640,
305744-305804,305885-306018,306310-306654
Length = 281
Score = 37.9 bits (84), Expect = 0.005
Identities = 19/47 (40%), Positives = 27/47 (57%)
Frame = +3
Query: 279 SYEYLLSASYFNNYKINRAGFSKMFRKLSDEAWEKAIDLIKHVTMRG 419
SY Y +YF+ + GF+K F++ SDE + A LIK+ MRG
Sbjct: 138 SYAYHSLFAYFDRDNVALKGFAKFFKESSDEERDHAEKLIKYQNMRG 184
>01_06_0250 + 27876358-27879261
Length = 967
Score = 32.7 bits (71), Expect = 0.17
Identities = 23/96 (23%), Positives = 44/96 (45%)
Frame = +3
Query: 213 EYNDYSHVAGELQAYANLYLKRSYEYLLSASYFNNYKINRAGFSKMFRKLSDEAWEKAID 392
EY + H GE+ ++ + LL+ SY +Y++ R+ SK RK S + +
Sbjct: 508 EYMFFRHAMGEMNKSRTTVVRMDHSQLLNVSYDISYRV-RSANSKA-RKNSSSLFSHPLS 565
Query: 393 LIKHVTMRGINMDFSRRSIYDPEPGKKYVVELHELD 500
+ + + S +YDP+ G ++V E++
Sbjct: 566 IERR--------EISAEGVYDPKTGILFMVGCQEIN 593
>06_03_1357 + 29543922-29545058,29545632-29545784,29545904-29546050
Length = 478
Score = 31.5 bits (68), Expect = 0.40
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +3
Query: 246 LQAYANLYLKRSYEYLLSASYFNNYKINRAGFSKMFRKLSDEA-WEKAIDLIKHVTMRGI 422
L AYA ++L +++ AG+S + R D W+KA DLI + G+
Sbjct: 163 LNAYARAGRLEDSWWVLGEMKRRGIRLDTAGYSTLVRLYRDNGMWKKATDLIMEMQELGV 222
Query: 423 NMD 431
+D
Sbjct: 223 ELD 225
>05_01_0264 + 2030080-2031270
Length = 396
Score = 29.5 bits (63), Expect = 1.6
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = -3
Query: 491 VEFHNVFLTGFRIVNATSGEVHVDTSHCDVLN*IDRLLPSFIG*LPEHFTK 339
V++ + R + S +V +D HC VL I++ P + HFTK
Sbjct: 66 VDYEKIVRETCRNIGFVSADVGLDADHCKVLVNIEQQSPDIAQGVHGHFTK 116
>01_02_0051 - 10655867-10657057
Length = 396
Score = 29.1 bits (62), Expect = 2.1
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = -3
Query: 491 VEFHNVFLTGFRIVNATSGEVHVDTSHCDVLN*IDRLLPSFIG*LPEHFTK 339
V++ + R + S +V +D HC VL I++ P + HFTK
Sbjct: 66 VDYEKIVRDTCRGIGFVSNDVGLDAEHCKVLVNIEQQSPDIAQGVHGHFTK 116
>02_02_0220 -
7992124-7992351,7992458-7992562,7993499-7993711,
7993937-7994196,7994425-7994701,7995226-7995371,
7995519-7995903,7996680-7996964
Length = 632
Score = 28.7 bits (61), Expect = 2.8
Identities = 11/40 (27%), Positives = 19/40 (47%)
Frame = +3
Query: 276 RSYEYLLSASYFNNYKINRAGFSKMFRKLSDEAWEKAIDL 395
R Y L YF+ N+ + + ++DE W K +D+
Sbjct: 476 RHMRYRLKKKYFDGVPANQVRTTSPLKCMTDEQWTKLVDM 515
>10_02_0150 -
5883942-5884328,5884573-5884677,5885219-5885311,
5885394-5885606,5886976-5887005
Length = 275
Score = 28.3 bits (60), Expect = 3.7
Identities = 10/41 (24%), Positives = 18/41 (43%)
Frame = +3
Query: 273 KRSYEYLLSASYFNNYKINRAGFSKMFRKLSDEAWEKAIDL 395
+R Y L YFN N + ++D W++ +D+
Sbjct: 34 QRQMRYRLKKKYFNGIPANEVRTTSPLSSMTDNEWKQLVDM 74
>08_01_1029 -
10419090-10419476,10419721-10419822,10420367-10420459,
10420542-10420754,10421625-10421654
Length = 274
Score = 28.3 bits (60), Expect = 3.7
Identities = 10/41 (24%), Positives = 18/41 (43%)
Frame = +3
Query: 273 KRSYEYLLSASYFNNYKINRAGFSKMFRKLSDEAWEKAIDL 395
+R Y L YFN N + ++D W++ +D+
Sbjct: 34 QRQMRYRLKKKYFNGIPANEVRTTSPLSSMTDNEWKQLVDM 74
>06_03_1065 - 27316270-27317032,27317062-27317189
Length = 296
Score = 28.3 bits (60), Expect = 3.7
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +2
Query: 203 AIRRIQ*LQPRRWRTSGLRQPLPQAVIRISAICFIFQQLQN 325
A RR + + RRWR G+ Q LP A + + CF ++ Q+
Sbjct: 66 AARRRRRRRQRRWRHQGVAQLLPGAPVDHALPCFRGEERQS 106
>03_05_0883 + 28483429-28484385,28485090-28485398
Length = 421
Score = 27.1 bits (57), Expect = 8.6
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -2
Query: 243 RQRRGCSHCIRRIARYTCP 187
R R C C+RR AR+ CP
Sbjct: 15 RTARACDGCMRRRARWHCP 33
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,779,812
Number of Sequences: 37544
Number of extensions: 228803
Number of successful extensions: 601
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -