Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_F24
         (377 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|...    26   1.7  
SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl...    25   3.0  
SPBC2D10.15c |||peptidyl-tRNA hydrolase Pth1 |Schizosaccharomyce...    25   3.0  
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce...    25   3.9  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    25   3.9  
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz...    24   6.9  
SPCC1919.03c |||AMP-activated protein kinase beta subunit |Schiz...    24   9.1  
SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr ...    24   9.1  

>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
           Prp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 906

 Score = 26.2 bits (55), Expect = 1.7
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +2

Query: 104 EDEQADRLRLPEDRH-RHRRPSQRELEE 184
           EDE+AD++    + H   RR SQRE +E
Sbjct: 85  EDEEADKIYQSVEEHLSKRRKSQREKQE 112


>SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 25.4 bits (53), Expect = 3.0
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
 Frame = +3

Query: 81  DNSSDFDKKMNRLIACVCQKIGIDTGDRLNVNSKKRKFLVKGPLAP-DSEFPPFQDFDVV 257
           D+ + F K+   L+  + + + I   D L +N K+R   VK P AP  +  PP +     
Sbjct: 286 DDYAIFQKRC--LVKKLKRTLNIKDSDELLINPKRRPIEVK-PAAPVPTPAPPVKTSPHP 342

Query: 258 HNYLQSDLRKAQVR 299
            +Y     R  +VR
Sbjct: 343 ASYRPQPTRNVEVR 356


>SPBC2D10.15c |||peptidyl-tRNA hydrolase Pth1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 218

 Score = 25.4 bits (53), Expect = 3.0
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 252 VVHNYLQSDLRKAQVRLRKRGQKGH 326
           VVH+ L+ DL K ++RL     +GH
Sbjct: 112 VVHDELELDLGKVKLRLPGGSHRGH 136


>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 983

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 326 LVLHTHPEEVPPDQRSV 376
           LV +THP+  PP +RS+
Sbjct: 160 LVYYTHPDTKPPKRRSL 176


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +3

Query: 156 GDRLNVNSKKRKFLVKGPLAPDSEFPP 236
           G   NV S+  KF  +GP  P +  PP
Sbjct: 226 GHAPNVTSESPKFPNRGPSIPSASVPP 252


>SPCC1795.08c |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 985

 Score = 24.2 bits (50), Expect = 6.9
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +3

Query: 201 KGPLAPDSEFPPFQ-DFDVVHNYLQSDLRKAQVRLRKRGQKGH 326
           KGPL PDSE+   Q   ++ +   Q +    Q+R+ +  +K H
Sbjct: 181 KGPLTPDSEYAARQLTEELANKSSQEEGVDKQLRVVEATEKEH 223


>SPCC1919.03c |||AMP-activated protein kinase beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 298

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +3

Query: 162 RLNVNSKKRKFLVKGPLAPDSEFPPFQDFD-VVHNYLQ 272
           +L   +++ KFLV G     S+FP   D +  ++NYL+
Sbjct: 138 QLRPGTQRFKFLVDGIWCCSSDFPTATDAEGNLYNYLE 175


>SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 481

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +3

Query: 195 LVKGPLAPDSEFPPFQDFDVVHNYLQSDLRK 287
           L+K  L     +P F   +V+H+ L+S L++
Sbjct: 136 LIKQLLDLVQNYPTFNQLNVLHDRLESSLKR 166


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,319,187
Number of Sequences: 5004
Number of extensions: 22414
Number of successful extensions: 86
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)