Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_F24
(377 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_01_0099 + 1493177-1493453,1494961-1495175,1495490-1496074 31 0.23
07_03_0902 - 22435692-22436156,22436684-22436923,22437228-224373... 28 2.1
07_03_0204 - 15150854-15151147,15152230-15153689,15154055-151542... 28 2.1
08_02_0311 - 15635165-15635590,15635777-15638698 28 2.8
11_02_0123 - 8550193-8550213,8550434-8550682,8550787-8550834,855... 27 3.7
05_01_0402 - 3173354-3173591,3173704-3173828,3174104-3174370,317... 27 3.7
11_06_0718 - 26592786-26593856,26597401-26597451,26597977-265984... 27 4.9
12_02_0735 - 22636835-22639502,22639755-22640734 27 6.5
12_01_0258 - 1900564-1901101,1901838-1902004 26 8.6
10_08_0448 + 18015609-18016052,18017147-18017248,18017332-180174... 26 8.6
10_07_0005 - 11744073-11745653 26 8.6
04_01_0586 - 7619541-7620656 26 8.6
03_05_0424 + 24107009-24107138,24107381-24107784 26 8.6
03_02_0033 - 5148513-5148806,5148928-5149271,5149391-5149472 26 8.6
>09_01_0099 + 1493177-1493453,1494961-1495175,1495490-1496074
Length = 358
Score = 31.5 bits (68), Expect = 0.23
Identities = 20/60 (33%), Positives = 28/60 (46%)
Frame = +2
Query: 101 QEDEQADRLRLPEDRHRHRRPSQRELEETQVPRQGPARARLGVPSVSGLRCRSQLLAERF 280
QED L + E+ QR E++Q PR+ A + L P V R RS LA ++
Sbjct: 5 QEDSFDLPLFVEEEDEAGAAAKQRRREQSQKPRRPRAPSFLDTPEVKERRARSSALAAKY 64
>07_03_0902 -
22435692-22436156,22436684-22436923,22437228-22437349,
22437441-22437587,22437753-22437882,22437981-22438116,
22438223-22438428,22438644-22438844,22438999-22439157,
22439781-22439858,22440453-22440542,22440625-22440777,
22440873-22440991,22441190-22441328,22441422-22441525,
22441944-22441989,22442087-22442252,22442356-22442383,
22442460-22442610,22442686-22442829,22442912-22443013,
22443566-22444093
Length = 1217
Score = 28.3 bits (60), Expect = 2.1
Identities = 13/50 (26%), Positives = 24/50 (48%)
Frame = +3
Query: 39 AAASWIGHPYFDVIDNSSDFDKKMNRLIACVCQKIGIDTGDRLNVNSKKR 188
AA W+G+ F VIDN + + N +A + +G +N + ++
Sbjct: 444 AAVLWLGNISFSVIDNENHVEIVSNEGLATAAKLLGCSAPQLMNALTTRK 493
>07_03_0204 - 15150854-15151147,15152230-15153689,15154055-15154266,
15155123-15155275,15155569-15155630,15155733-15155785,
15156380-15156452,15156499-15156619,15156699-15156878,
15157333-15157391
Length = 888
Score = 28.3 bits (60), Expect = 2.1
Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
Frame = +2
Query: 101 QEDEQADRL-RLPEDRHRH-RRPSQRELEETQVPRQGPARARLGVPSVSGLRCRSQLLAE 274
QE+EQ RL RL +R + S + + + R+ + VPS++GL+ E
Sbjct: 791 QEEEQMKRLERLKLERQKRIAARSNGKSDPPKASREHANGLSISVPSLTGLKKEKSGSTE 850
Query: 275 RFA*SASQTAQARPEGSLVLHTHPEEVPPD 364
F+ + A+ + G ++P+ V D
Sbjct: 851 SFSERLKRLAEPKSIGGADHLSNPKSVTTD 880
>08_02_0311 - 15635165-15635590,15635777-15638698
Length = 1115
Score = 27.9 bits (59), Expect = 2.8
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +1
Query: 1 ARGSNWPGTWTTKRP 45
A GS+WPGTW P
Sbjct: 539 ADGSHWPGTWAASAP 553
>11_02_0123 -
8550193-8550213,8550434-8550682,8550787-8550834,
8550939-8551025,8551104-8551184,8551264-8551368,
8551464-8551556,8551635-8551715,8551794-8551895,
8552144-8552224,8552304-8552405,8552499-8552834,
8552920-8553006,8553275-8553493,8553575-8553769
Length = 628
Score = 27.5 bits (58), Expect = 3.7
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +2
Query: 209 ARARLGVPSVSGLRCRS-QLLAERFA*SASQTAQARPEGSLVLHTH 343
A+ R G PS+ R + QL E+ A ++T+Q E SLV H H
Sbjct: 384 AKDRRGNPSIPYERTNAKQLSLEKLA-QRTKTSQRNAESSLVTHEH 428
>05_01_0402 -
3173354-3173591,3173704-3173828,3174104-3174370,
3174488-3174856,3175099-3175608
Length = 502
Score = 27.5 bits (58), Expect = 3.7
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = +2
Query: 125 LRLPEDRHRHRRPSQRELEETQVPRQGPARARLGVPSVSGLRCRSQLLAERFA*SASQ 298
L LP D R RP +REL E + A + + S +R R L+ + A A++
Sbjct: 146 LMLPPDSAREWRPHERELVEVVADQVAVALSHAAILEES-MRARDLLMEQNIALDAAR 202
>11_06_0718 -
26592786-26593856,26597401-26597451,26597977-26598423,
26599748-26599815,26599965-26600052
Length = 574
Score = 27.1 bits (57), Expect = 4.9
Identities = 14/48 (29%), Positives = 29/48 (60%), Gaps = 4/48 (8%)
Frame = -1
Query: 284 TQIALQVVVNDIEVLKRRE----LRVGRERALDEELAFLRVHVETVAG 153
T++A+Q++ +++ ++R + L VG R +DE++ + HVE G
Sbjct: 476 TKVAVQLLQRNMDEIRRSDAWTDLDVGTRRRIDEQVKEIADHVEKGEG 523
>12_02_0735 - 22636835-22639502,22639755-22640734
Length = 1215
Score = 26.6 bits (56), Expect = 6.5
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = +1
Query: 7 GSNWPGTWT 33
GS+WPGTWT
Sbjct: 582 GSHWPGTWT 590
>12_01_0258 - 1900564-1901101,1901838-1902004
Length = 234
Score = 26.2 bits (55), Expect = 8.6
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +1
Query: 286 KRKSDCASAARRVTGLTYTP*GSSTRPTVS 375
K KS+ A+AA L Y GSS RP V+
Sbjct: 178 KIKSEAAAAAVGACSLLYMSWGSSNRPVVA 207
>10_08_0448 +
18015609-18016052,18017147-18017248,18017332-18017475,
18017555-18017705,18017793-18017820,18018456-18018621,
18018701-18018764,18019320-18019423,18019572-18019710,
18020114-18020232,18020333-18020485,18020565-18020654,
18020952-18021029,18021671-18021829,18021914-18022117,
18022209-18022414,18022495-18022630,18022859-18022898,
18023329-18023408,18023569-18024228
Length = 1088
Score = 26.2 bits (55), Expect = 8.6
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +3
Query: 39 AAASWIGHPYFDVIDNSSDFDKKMNRLIACVCQKIGIDTGDRLNVNSKKRKFLV 200
+A W+G F VIDN + + ++ V + +G D LN+ KR V
Sbjct: 422 SAILWLGDVSFTVIDNENHVEIVVDEAAETVARLLGCSIED-LNLALSKRHMKV 474
>10_07_0005 - 11744073-11745653
Length = 526
Score = 26.2 bits (55), Expect = 8.6
Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
Frame = +2
Query: 122 RLRLPEDRHRHRRPSQRELEETQVPRQGPARARLGVPSVSGLRCR--SQLLAERFA*SAS 295
RLR P + + ++R LEE GP + V V LRC S L ER A
Sbjct: 450 RLRSPNKKTANEL-NRRLLEEVNAASSGPYMSSANVGGVYMLRCAVGSTLTEERHVREAW 508
Query: 296 QTAQAR 313
+ Q R
Sbjct: 509 KVVQDR 514
>04_01_0586 - 7619541-7620656
Length = 371
Score = 26.2 bits (55), Expect = 8.6
Identities = 12/57 (21%), Positives = 23/57 (40%)
Frame = +3
Query: 75 VIDNSSDFDKKMNRLIACVCQKIGIDTGDRLNVNSKKRKFLVKGPLAPDSEFPPFQD 245
++D + + + NR+ C + + I N + + G EFPP +D
Sbjct: 233 LVDKAMQLESEHNRMTNCKRRMVNIPVFPCGNQGQRTEPLQITGSSVAHQEFPPQED 289
>03_05_0424 + 24107009-24107138,24107381-24107784
Length = 177
Score = 26.2 bits (55), Expect = 8.6
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 149 RHRRPSQRELEETQVPRQGPARARLGV 229
RHRRPS+ T P PA + LG+
Sbjct: 126 RHRRPSRPPETTTATPSSRPASSPLGL 152
>03_02_0033 - 5148513-5148806,5148928-5149271,5149391-5149472
Length = 239
Score = 26.2 bits (55), Expect = 8.6
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +2
Query: 107 DEQADRLRLPEDRHRHRRPSQRELEETQVPRQGPARARLGV 229
DEQA + RL +++ R S ++ + + PR+ A LG+
Sbjct: 57 DEQAKKRRLSDEQARFLEMSFKKERKLETPRKVQLAAELGL 97
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,332,954
Number of Sequences: 37544
Number of extensions: 165403
Number of successful extensions: 680
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 612769692
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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