Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_F24
         (377 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97010-6|AAL65797.1|  501|Caenorhabditis elegans Hypothetical pr...   100   3e-22
U97010-5|AAK73903.1|  444|Caenorhabditis elegans Hypothetical pr...   100   3e-22
U97010-4|AAL65798.1|  438|Caenorhabditis elegans Hypothetical pr...   100   3e-22
Z81568-10|CAB04600.1|  441|Caenorhabditis elegans Hypothetical p...    31   0.27 
U41278-4|AAK31513.3|  928|Caenorhabditis elegans Hypothetical pr...    30   0.63 
U50313-2|AAY86230.1|  883|Caenorhabditis elegans Inositol 1,4,5-...    29   0.83 
U50313-1|AAY86229.1|  923|Caenorhabditis elegans Inositol 1,4,5-...    29   0.83 
AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of e...    29   1.1  
U29082-3|AAT92083.1| 1178|Caenorhabditis elegans Troponin t prot...    28   2.5  
U28943-5|AAA68359.2|  435|Caenorhabditis elegans Hypothetical pr...    28   2.5  
Z48334-9|CAA88314.1|  810|Caenorhabditis elegans Hypothetical pr...    27   5.9  
Z48045-12|CAA88105.1|  810|Caenorhabditis elegans Hypothetical p...    27   5.9  
Z82267-6|CAB05189.2|  133|Caenorhabditis elegans Hypothetical pr...    26   7.8  
Z79696-1|CAB01972.1| 1584|Caenorhabditis elegans Hypothetical pr...    26   7.8  
Z35663-13|CAA84729.1|  234|Caenorhabditis elegans Hypothetical p...    26   7.8  
U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homolog...    26   7.8  
AL034393-16|CAA22331.2|  286|Caenorhabditis elegans Hypothetical...    26   7.8  
AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin pro...    26   7.8  

>U97010-6|AAL65797.1|  501|Caenorhabditis elegans Hypothetical
           protein W08A12.1a protein.
          Length = 501

 Score =  100 bits (240), Expect = 3e-22
 Identities = 53/118 (44%), Positives = 71/118 (60%), Gaps = 2/118 (1%)
 Frame = +3

Query: 9   VELARDLDYKAAASWIGHPYFDVIDN--SSDFDKKMNRLIACVCQKIGIDTGDRLNVNSK 182
           V  A +LD +  + WIGHPY D+IDN  +S FD K+N+LI  VC + GI +GDRL  +SK
Sbjct: 259 VSHAMELDKRTRSVWIGHPYMDIIDNKNTSTFDDKVNKLIQVVCDRTGIRSGDRLAKDSK 318

Query: 183 KRKFLVKGPLAPDSEFPPFQDFDVVHNYLQSDLRKAQVRLRKRGQKGHWSYIHTLRKF 356
           KRK+LV         F  F++FD+ H YL SD    Q R R+R Q    +Y  T R++
Sbjct: 319 KRKWLVSA--VDWKNFGKFEEFDIEHFYLLSDESNIQHRFRRRTQNNRSTYTLTSREY 374


>U97010-5|AAK73903.1|  444|Caenorhabditis elegans Hypothetical
           protein W08A12.1b protein.
          Length = 444

 Score =  100 bits (240), Expect = 3e-22
 Identities = 53/118 (44%), Positives = 71/118 (60%), Gaps = 2/118 (1%)
 Frame = +3

Query: 9   VELARDLDYKAAASWIGHPYFDVIDN--SSDFDKKMNRLIACVCQKIGIDTGDRLNVNSK 182
           V  A +LD +  + WIGHPY D+IDN  +S FD K+N+LI  VC + GI +GDRL  +SK
Sbjct: 202 VSHAMELDKRTRSVWIGHPYMDIIDNKNTSTFDDKVNKLIQVVCDRTGIRSGDRLAKDSK 261

Query: 183 KRKFLVKGPLAPDSEFPPFQDFDVVHNYLQSDLRKAQVRLRKRGQKGHWSYIHTLRKF 356
           KRK+LV         F  F++FD+ H YL SD    Q R R+R Q    +Y  T R++
Sbjct: 262 KRKWLVSA--VDWKNFGKFEEFDIEHFYLLSDESNIQHRFRRRTQNNRSTYTLTSREY 317


>U97010-4|AAL65798.1|  438|Caenorhabditis elegans Hypothetical
           protein W08A12.1c protein.
          Length = 438

 Score =  100 bits (240), Expect = 3e-22
 Identities = 53/118 (44%), Positives = 71/118 (60%), Gaps = 2/118 (1%)
 Frame = +3

Query: 9   VELARDLDYKAAASWIGHPYFDVIDN--SSDFDKKMNRLIACVCQKIGIDTGDRLNVNSK 182
           V  A +LD +  + WIGHPY D+IDN  +S FD K+N+LI  VC + GI +GDRL  +SK
Sbjct: 196 VSHAMELDKRTRSVWIGHPYMDIIDNKNTSTFDDKVNKLIQVVCDRTGIRSGDRLAKDSK 255

Query: 183 KRKFLVKGPLAPDSEFPPFQDFDVVHNYLQSDLRKAQVRLRKRGQKGHWSYIHTLRKF 356
           KRK+LV         F  F++FD+ H YL SD    Q R R+R Q    +Y  T R++
Sbjct: 256 KRKWLVSA--VDWKNFGKFEEFDIEHFYLLSDESNIQHRFRRRTQNNRSTYTLTSREY 311


>Z81568-10|CAB04600.1|  441|Caenorhabditis elegans Hypothetical
           protein K08E3.8 protein.
          Length = 441

 Score = 31.1 bits (67), Expect = 0.27
 Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +3

Query: 201 KGPLAPDSE-FPPFQD-FDVVHNYLQSDLRKAQVRLRKRG 314
           K PL P+ E     QD  D+V N +Q DLR + V + KRG
Sbjct: 282 KEPLKPNEEQIRMVQDPVDLVRNLVQKDLRNSLVEMNKRG 321


>U41278-4|AAK31513.3|  928|Caenorhabditis elegans Hypothetical
           protein F33G12.5 protein.
          Length = 928

 Score = 29.9 bits (64), Expect = 0.63
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +2

Query: 104 EDEQADRLRLPEDRHRHRRPSQRELEETQVPRQ 202
           EDE+ADR    E +    +  Q EL+ET+VP +
Sbjct: 656 EDERADRRAEEERKDLESKQEQLELKETKVPEE 688


>U50313-2|AAY86230.1|  883|Caenorhabditis elegans Inositol
           1,4,5-trisphosphate receptorinteracting protein protein
           1, isoform b protein.
          Length = 883

 Score = 29.5 bits (63), Expect = 0.83
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +3

Query: 36  KAAASWIGHPYFDVIDNSSDFDKKMNRLIACVCQKIGIDTG 158
           +AA + + HP     DN+   DK++N     VC+  G++TG
Sbjct: 613 EAAEATLAHP--SSFDNTITADKEVNAFSQYVCRVTGVETG 651


>U50313-1|AAY86229.1|  923|Caenorhabditis elegans Inositol
           1,4,5-trisphosphate receptorinteracting protein protein
           1, isoform a protein.
          Length = 923

 Score = 29.5 bits (63), Expect = 0.83
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +3

Query: 36  KAAASWIGHPYFDVIDNSSDFDKKMNRLIACVCQKIGIDTG 158
           +AA + + HP     DN+   DK++N     VC+  G++TG
Sbjct: 613 EAAEATLAHP--SSFDNTITADKEVNAFSQYVCRVTGVETG 651


>AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of efl-1
            mutant phenotypeprotein 1 protein.
          Length = 4177

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 204  GPLAPDSEFPPFQDFDVVHNYLQSDLRKAQ 293
            GP A  ++FP   DFDV   Y + +L K +
Sbjct: 3780 GPFAILTQFPKLLDFDVKRKYFRKELTKLE 3809


>U29082-3|AAT92083.1| 1178|Caenorhabditis elegans Troponin t protein
           3, isoform b protein.
          Length = 1178

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 150 DTGDRLNVNSKKRKFLVKGPLAPDSEFPPF 239
           D+G   + + ++R+ L  GP  P S F PF
Sbjct: 115 DSGPSSSAHGQRRQSLEAGPYGPSSPFSPF 144


>U28943-5|AAA68359.2|  435|Caenorhabditis elegans Hypothetical
           protein E04F6.6 protein.
          Length = 435

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 5/34 (14%)
 Frame = +2

Query: 134 PEDRHRHRRPS-----QRELEETQVPRQGPARAR 220
           P  RHRHRRPS     +R++E+ +  R+   +AR
Sbjct: 59  PRRRHRHRRPSYDDAYERQMEQWRQQRKEANKAR 92


>Z48334-9|CAA88314.1|  810|Caenorhabditis elegans Hypothetical
           protein C41C4.8 protein.
          Length = 810

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +3

Query: 75  VIDNSSDFDKKMNRLIACVCQKIGIDTGDRLNVNSKKRKFLVKGPLAPDS 224
           +ID S + D  M  L      ++G+  GD + +  KKR+  V   L  D+
Sbjct: 33  IIDQSDNDDNSMVMLSQAKMDELGLFRGDSVILKGKKRRETVSIVLNADN 82


>Z48045-12|CAA88105.1|  810|Caenorhabditis elegans Hypothetical
           protein C41C4.8 protein.
          Length = 810

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +3

Query: 75  VIDNSSDFDKKMNRLIACVCQKIGIDTGDRLNVNSKKRKFLVKGPLAPDS 224
           +ID S + D  M  L      ++G+  GD + +  KKR+  V   L  D+
Sbjct: 33  IIDQSDNDDNSMVMLSQAKMDELGLFRGDSVILKGKKRRETVSIVLNADN 82


>Z82267-6|CAB05189.2|  133|Caenorhabditis elegans Hypothetical
           protein F38C2.2 protein.
          Length = 133

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 5/37 (13%)
 Frame = +3

Query: 93  DFDKKMNRLIACVCQKIGIDT-----GDRLNVNSKKR 188
           DF +    ++    +KIGIDT     G RL++N ++R
Sbjct: 20  DFQRFFREIVVVTMEKIGIDTAFAEPGVRLSINLRER 56


>Z79696-1|CAB01972.1| 1584|Caenorhabditis elegans Hypothetical
           protein F54F3.1 protein.
          Length = 1584

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +2

Query: 101 QEDEQADRLRLPEDRHRHRRPSQRELEETQVPRQGPARARLG-VPSVS 241
           ++DEQ D  R  E   + +    ++  +   P+Q P R++ G +P +S
Sbjct: 312 EDDEQVDGTRYEEPARQAQEQHHQQHHQPDQPQQQPQRSQEGSLPKMS 359


>Z35663-13|CAA84729.1|  234|Caenorhabditis elegans Hypothetical
           protein T04A8.10 protein.
          Length = 234

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
 Frame = -1

Query: 317 LAALAQSDLRFTQIALQVV----VNDIEVLKRRELRVGRERALDEE 192
           L A  Q +L   +I  Q+     +ND+E+ K + L   RER L  E
Sbjct: 162 LEAAVQRELELERIDEQMAALKKLNDMEIQKEKRLNQARERRLKRE 207


>U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homology
           domain protein 1 protein.
          Length = 1346

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +3

Query: 243 DFDVVHNYLQSDLRKAQVRLRKRGQKGHWSYI 338
           D D+VH ++Q+      +RL +   + H +YI
Sbjct: 147 DQDLVHEFVQNQGLDCMIRLGRTADQNHQNYI 178


>AL034393-16|CAA22331.2|  286|Caenorhabditis elegans Hypothetical
           protein Y18D10A.21 protein.
          Length = 286

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = -1

Query: 320 LLAALAQSDLRFTQIALQVVVNDIEVLKRRELRVGRERALDEE 192
           ++   A  DL FT++AL+ ++N   VL+    R  ++   D+E
Sbjct: 110 IIGIRASKDLSFTELALEHLMNPFGVLQISHYRSWKKDDSDKE 152


>AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin
           protein.
          Length = 1346

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +3

Query: 243 DFDVVHNYLQSDLRKAQVRLRKRGQKGHWSYI 338
           D D+VH ++Q+      +RL +   + H +YI
Sbjct: 147 DQDLVHEFVQNQGLDCMIRLGRTADQNHQNYI 178


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,536,423
Number of Sequences: 27780
Number of extensions: 135341
Number of successful extensions: 569
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 557037416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)