Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_F24
         (377 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding prote...    25   0.22 
AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding prote...    25   0.39 
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   4.8  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   6.4  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   6.4  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             21   6.4  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    20   8.4  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    20   8.4  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    20   8.4  

>AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 25.4 bits (53), Expect = 0.22
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +3

Query: 84  NSSDFDKKMNRLIACVCQKIGIDTGDRLNV 173
           NS +  KK+    ACV QK+    G+ LNV
Sbjct: 44  NSEEQMKKLGCFEACVFQKLHFMDGNTLNV 73


>AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 24.6 bits (51), Expect = 0.39
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +3

Query: 84  NSSDFDKKMNRLIACVCQKIGIDTGDRLNV 173
           NS +  KK     ACV QK+    G+ LNV
Sbjct: 44  NSEEQMKKFGCFEACVFQKLHFMDGNTLNV 73


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.0 bits (42), Expect = 4.8
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -3

Query: 285 YANRSASSCERHRSPETEGTPS 220
           Y+ R +SS    RSP +  +PS
Sbjct: 24  YSKRFSSSIVDRRSPSSSRSPS 45


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 10/40 (25%), Positives = 19/40 (47%)
 Frame = +3

Query: 108 MNRLIACVCQKIGIDTGDRLNVNSKKRKFLVKGPLAPDSE 227
           ++ +++ V   + I TG+ L    K  K      + PDS+
Sbjct: 58  LSAMLSLVVVTVAISTGEWLLTEEKLPKTSSNASVEPDSK 97


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = -3

Query: 336 CKTSDPSGRACAV*LALYANRSASSCERHRSPETEGTPSRARAGP 202
           C  S  S R+    ++  +NRS SS    R P T G+ + A   P
Sbjct: 21  CSNSQ-SQRSSGSSISRNSNRSESSGYCGRRPSTFGSSNEALPQP 64


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = -3

Query: 336 CKTSDPSGRACAV*LALYANRSASSCERHRSPETEGTPSRARAGP 202
           C  S  S R+    ++  +NRS SS    R P T G+ + A   P
Sbjct: 21  CSNSQ-SQRSSGSSISRNSNRSESSGYCGRRPSTFGSSNEALPQP 64


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 20.2 bits (40), Expect = 8.4
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 189 KFLVKGPLAPDSEFPP 236
           KFL KGP+A  +E  P
Sbjct: 150 KFLEKGPVALINELYP 165


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 20.2 bits (40), Expect = 8.4
 Identities = 8/30 (26%), Positives = 16/30 (53%)
 Frame = +2

Query: 149 RHRRPSQRELEETQVPRQGPARARLGVPSV 238
           R+R P Q + +     R+G +  R+ +P +
Sbjct: 429 RYRGPKQNKPKVLHAIRRGASILRVSMPKI 458


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 20.2 bits (40), Expect = 8.4
 Identities = 6/14 (42%), Positives = 8/14 (57%)
 Frame = -3

Query: 345 GCVCKTSDPSGRAC 304
           GC CKT +   + C
Sbjct: 434 GCECKTCNSKTKCC 447


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,846
Number of Sequences: 438
Number of extensions: 1424
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9176370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)