Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_F23
(533 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy... 156 2e-39
SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein L7|... 151 8e-38
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom... 146 2e-36
SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces... 29 0.58
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 27 1.3
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 26 3.1
SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein S17|S... 25 5.4
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p... 25 9.4
>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 251
Score = 156 bits (378), Expect = 2e-39
Identities = 76/147 (51%), Positives = 97/147 (65%)
Frame = +2
Query: 92 SKKLPAVPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKERD 271
SK+ PES+ ++++A KKR+ I KRAE Y EYR ER+
Sbjct: 10 SKEQIFAPESLLKKKKTQEQSREQRVAAAAEKKAAQQKKRELIAKRAESYDAEYRKAERE 69
Query: 272 EIRLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNK 451
+I L R+AR GNYYVP E KL FVIRIRG+N + PK RK++QL RL QINNGVFV+ NK
Sbjct: 70 QIELGRKARAEGNYYVPDETKLVFVIRIRGINNIPPKARKIMQLLRLIQINNGVFVKFNK 129
Query: 452 ATVNMLRIAEPYIAWGYPNLKSVRELV 532
AT ML++ EPY+ +G PNLK+VREL+
Sbjct: 130 ATKEMLQVVEPYVTYGIPNLKTVRELL 156
>SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein
L7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 250
Score = 151 bits (365), Expect = 8e-38
Identities = 71/140 (50%), Positives = 93/140 (66%)
Frame = +2
Query: 113 PESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQ 292
PES+ +++SA KKR+ I KRAE Y EYR ER++I LAR+
Sbjct: 16 PESLLKKTKAQKQSREQIVAAAAEKKSARQKKRELIAKRAEAYEAEYRAAEREQIELARK 75
Query: 293 ARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLR 472
AR GNY+VP E KL FV+RIRG+N + PK RK++QL RL QINNG+FV+ NKA ML+
Sbjct: 76 ARAEGNYFVPHEPKLIFVVRIRGINNIPPKARKIMQLLRLLQINNGIFVKFNKAIKEMLQ 135
Query: 473 IAEPYIAWGYPNLKSVRELV 532
+ EPY+ +G PN K+VREL+
Sbjct: 136 VVEPYVTYGIPNHKTVRELI 155
>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
L7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 249
Score = 146 bits (353), Expect = 2e-36
Identities = 68/118 (57%), Positives = 86/118 (72%)
Frame = +2
Query: 179 LKRRSASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIR 358
+ ++ A K RKE FKRAE ++ YR +ER+ IRL R A+N+G+ +VP E KL FVIRI
Sbjct: 37 IAKKEAQKKNRKETFKRAETFINNYRQRERERIRLNRSAKNKGDIFVPDETKLLFVIRIA 96
Query: 359 GVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELV 532
GV + PK+RKVL+L RL +INN VFVR NKA MLRI EPY+ +G PNL SVREL+
Sbjct: 97 GVKNMPPKIRKVLRLLRLSRINNAVFVRNNKAVAQMLRIVEPYVMYGIPNLHSVRELI 154
>SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 224
Score = 28.7 bits (61), Expect = 0.58
Identities = 11/38 (28%), Positives = 24/38 (63%)
Frame = +2
Query: 197 SIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARNRGN 310
S+K+ +EI ++ E+ +R+K ++ ++ + A N GN
Sbjct: 152 SLKRNREIIEKEERSSFHFRVKPKNLDKVPKLAENEGN 189
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 27.5 bits (58), Expect = 1.3
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +2
Query: 293 ARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRL 412
+ N+G YY G +AFV I GV + SP++ LQL ++
Sbjct: 1133 SENKGMYY--GLLGIAFVA-IAGVTEFSPELNAKLQLVKM 1169
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 26.2 bits (55), Expect = 3.1
Identities = 9/34 (26%), Positives = 18/34 (52%)
Frame = +2
Query: 227 RAEQYVKEYRIKERDEIRLARQARNRGNYYVPGE 328
+A Q ++ + +RL N+ N+++PGE
Sbjct: 309 KATQMTVDFLVDWAKSVRLCANRFNKSNFFIPGE 342
>SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein
S17|Schizosaccharomyces pombe|chr 3|||Manual
Length = 132
Score = 25.4 bits (53), Expect = 5.4
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +2
Query: 188 RSASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARN 301
R S K ++E +R +QYV E E+D+I + + ++
Sbjct: 67 RGISFKLQEEERERKDQYVPEVSELEKDKINVDQDTKD 104
>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 24.6 bits (51), Expect = 9.4
Identities = 12/43 (27%), Positives = 25/43 (58%)
Frame = +2
Query: 182 KRRSASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARNRGN 310
KR A ++ K+ +R ++ + E KE++ IRL + +++ N
Sbjct: 121 KRIEAERQRLKDEEERRKKELMEKEKKEKERIRLIEEQKHKEN 163
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,123,644
Number of Sequences: 5004
Number of extensions: 40184
Number of successful extensions: 116
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -