Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_F22
         (433 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom...    28   0.70 
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   2.8  
SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA methyltransfera...    25   3.8  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    25   5.0  
SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces pombe...    24   8.7  

>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 534

 Score = 27.9 bits (59), Expect = 0.70
 Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
 Frame = -1

Query: 373 TLFYCIQG*ITTFYNSPSSLSRISK*PRSNYYWNISFTMHHRY*KTTVYKNI-VKYHDEC 197
           T+F  +Q  +  F    +S+S+ S     N   N     +    K   + +  +K++ EC
Sbjct: 434 TIFGRLQNVLHDFVEGETSISKESLQQHKNTIENQLAAANWDCQKIDEFMDAELKFYKEC 493

Query: 196 YTSRLQVCIRNVK*CYYSILQVN 128
            TS+ +  I++V  C Y   Q N
Sbjct: 494 QTSQWEEIIKSVHECIYKWAQTN 516


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -2

Query: 420 PYPTVPSHCSTSQTVAPCSIASRAELPLSIT 328
           P PT  + C+TS ++ P   +S    P++ T
Sbjct: 164 PLPTTSTSCTTSTSIPPTGGSSSLSTPITPT 194



 Score = 24.6 bits (51), Expect = 6.6
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -2

Query: 432 SGLPPYPTVPSHCSTSQTVAPCSIASRAELPLSIT 328
           S   P P+  + C+TS ++ P   +S    P++ T
Sbjct: 103 SSSSPLPSTSTSCTTSTSIPPTGGSSSLSTPITPT 137


>SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 548

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = +2

Query: 209 IFYYILINCCFLISMVHCERNIPIVITTWSFTNSTQRAW 325
           IF   L+N  + +S  H + N       WSF     R+W
Sbjct: 435 IFVSALLNAGYRVSGSHAKSNAIKTNAPWSFVWDVLRSW 473


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -2

Query: 420 PYPTVPSHCSTSQTVAPCSIASRAELPLSITP 325
           PY   P   ST+  VAP SI      PL+  P
Sbjct: 639 PYGNNPLFSSTTSQVAPTSIQEPIASPLTSKP 670


>SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
 Frame = +2

Query: 242 LISMVHCERNIPIVITTWSFTNSTQRAW-GVIESGNSALDAIEQGATVC 385
           L++ V C    P V  T       Q    G+IE G    DA+  G T+C
Sbjct: 20  LVTFVTC--GFPNVDETIKIMQGLQNGGAGIIELGIPFSDAVADGPTIC 66


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,751,787
Number of Sequences: 5004
Number of extensions: 34329
Number of successful extensions: 83
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)