Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_F22
         (433 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0711 - 27468045-27468264,27468831-27468935,27469431-274694...    63   8e-11
05_03_0031 - 7534327-7534480,7535546-7535649,7535724-7535793,753...    30   0.70 

>04_04_0711 -
           27468045-27468264,27468831-27468935,27469431-27469489,
           27469566-27470009,27470123-27470187,27470871-27471066,
           27471429-27471590
          Length = 416

 Score = 63.3 bits (147), Expect = 8e-11
 Identities = 27/57 (47%), Positives = 39/57 (68%), Gaps = 4/57 (7%)
 Frame = +2

Query: 275 PIVITTWSFTNSTQRAWGVIES----GNSALDAIEQGATVCDVEQCDGTVGYGGSPD 433
           P+V++TW F  + + AW V+ +    G SA+DA+  G + C+V +CDGTVG GGSPD
Sbjct: 71  PVVVSTWPFREAVRAAWEVVSASGGAGCSAVDAVVAGCSACEVLRCDGTVGPGGSPD 127


>05_03_0031 -
           7534327-7534480,7535546-7535649,7535724-7535793,
           7535889-7535932,7536042-7536146,7536223-7536344,
           7536807-7536894,7536966-7537052,7537718-7537786,
           7537859-7538188,7539777-7539824,7540003-7540069,
           7540150-7540208,7541220-7541453,7541536-7541601,
           7541684-7541883,7542104-7542197,7542295-7542414,
           7542596-7542703,7542808-7542871,7543378-7543409,
           7546049-7548007
          Length = 1407

 Score = 30.3 bits (65), Expect = 0.70
 Identities = 16/63 (25%), Positives = 29/63 (46%)
 Frame = -1

Query: 370 LFYCIQG*ITTFYNSPSSLSRISK*PRSNYYWNISFTMHHRY*KTTVYKNIVKYHDECYT 191
           L  CI   +T     PS   +    P S+YY+++ +++ +    T   ++       CYT
Sbjct: 745 LLDCIVSKVTIVQVPPSVDGKSKSVPSSDYYYDMKYSIDYSTFSTIEMEDTDDLMQSCYT 804

Query: 190 SRL 182
           SR+
Sbjct: 805 SRI 807


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,186,379
Number of Sequences: 37544
Number of extensions: 179645
Number of successful extensions: 372
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 371
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)