Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_F22
         (433 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50198-2|AAA91260.2|  363|Caenorhabditis elegans Hypothetical pr...    52   2e-07
Z84574-5|CAB06541.1|  846|Caenorhabditis elegans Hypothetical pr...    31   0.47 
AL110484-28|CAB54395.2|  419|Caenorhabditis elegans Hypothetical...    31   0.47 
U41273-2|AAA82454.2|  306|Caenorhabditis elegans Hypothetical pr...    27   7.7  

>U50198-2|AAA91260.2|  363|Caenorhabditis elegans Hypothetical
           protein R04B3.2 protein.
          Length = 363

 Score = 51.6 bits (118), Expect = 2e-07
 Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
 Frame = +2

Query: 212 FYYILINCCFLISMVHCERNIPIVITTWS---FTNSTQRAWGVIESGNSALDAIEQGATV 382
           FY  L+   ++   ++ + ++P+VITTW    F  +T+ A      G      +E G + 
Sbjct: 4   FYIFLLLIPYINGTIN-DDSLPMVITTWGSDGFKKATKNAVDATLLGGRMFGLVE-GLST 61

Query: 383 CDVEQCDGTVGYGGSPD 433
           C+  QCD TVGYGGSPD
Sbjct: 62  CEALQCDTTVGYGGSPD 78


>Z84574-5|CAB06541.1|  846|Caenorhabditis elegans Hypothetical
           protein F33E2.6 protein.
          Length = 846

 Score = 30.7 bits (66), Expect = 0.47
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -2

Query: 426 LPPYPTVPSHCSTSQTVAPCSIASRAELPLSITPQ 322
           LPP  TVP      +T  P +  SR E+P+++TP+
Sbjct: 719 LPP-ETVPPKTEAPRTEVPMTGPSRTEVPMTVTPE 752


>AL110484-28|CAB54395.2|  419|Caenorhabditis elegans Hypothetical
           protein Y38E10A.4 protein.
          Length = 419

 Score = 30.7 bits (66), Expect = 0.47
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = -2

Query: 423 PPYPTVPSHCSTSQTVAPCSIASRA 349
           PP P +PS C++S  +AP +I+S A
Sbjct: 294 PPTPVIPSMCNSSMIMAPGTISSPA 318


>U41273-2|AAA82454.2|  306|Caenorhabditis elegans Hypothetical
           protein C26B9.6 protein.
          Length = 306

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 14/56 (25%), Positives = 23/56 (41%)
 Frame = -1

Query: 328 SPSSLSRISK*PRSNYYWNISFTMHHRY*KTTVYKNIVKYHDECYTSRLQVCIRNV 161
           S  +L R  +  R  YYW    +    Y          KY +ECY  +++ C+  +
Sbjct: 198 SKPTLRRSKRTTREKYYWIYESSSFGYY---RYDPKDEKYLEECYCRKMETCVMRI 250


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,707,734
Number of Sequences: 27780
Number of extensions: 194400
Number of successful extensions: 437
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 436
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 724655464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)