Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_F22
         (433 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        23   1.9  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   1.9  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    22   2.6  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   5.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   5.9  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   7.8  

>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -1

Query: 286 NYYWNISFTMHHRY 245
           N YWN+   M H+Y
Sbjct: 44  NVYWNVPTFMCHKY 57


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -2

Query: 432 SGLPPYPTVPSHCSTSQTV 376
           SG+PP P +P    T  T+
Sbjct: 427 SGMPPLPNMPGSMPTMPTM 445


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -1

Query: 322 SSLSRISK*PRSNYYWNISFTMHHRY*KTTVYKNIV 215
           SSLS   K    N Y N +   ++ Y K   YKN +
Sbjct: 316 SSLSNNYKYSNYNNYNNYNNNNYNNYNKKLYYKNYI 351


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -2

Query: 423 PPYPTVPSHCSTSQTVAPCSIASRAELPL 337
           P YP +  H + SQT+    I SR   P+
Sbjct: 347 PEYPMIRVHKTQSQTI---DIYSRIGFPI 372


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 10/28 (35%), Positives = 12/28 (42%)
 Frame = -2

Query: 432  SGLPPYPTVPSHCSTSQTVAPCSIASRA 349
            SG     + P HC T Q      IA +A
Sbjct: 1161 SGGDGVKSAPIHCQTEQDAPEAPIAIKA 1188


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 291 VVITIGIFLSQCTIDIK 241
           V ++ GIF S C ID++
Sbjct: 120 VWLSHGIFRSSCDIDVE 136


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,128
Number of Sequences: 438
Number of extensions: 2814
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11244597
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)