Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_F21
         (461 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC119.14 |rti1||Rad22 homolog Rti1|Schizosaccharomyces pombe|c...    27   1.8  
SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter M...    26   3.2  
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce...    25   4.3  
SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting pr...    25   5.6  
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa...    25   5.6  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    25   7.4  
SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   7.4  
SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces pombe...    25   7.4  
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    25   7.4  
SPAC2G11.04 |||RNA-binding protein, G-patch type |Schizosaccharo...    25   7.4  
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    24   9.8  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    24   9.8  
SPAC2F3.01 ||SPAC323.09|mannosyltransferase complex subunit |Sch...    24   9.8  

>SPBC119.14 |rti1||Rad22 homolog Rti1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 371

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 357 NRIIPIKKQNITPNRKINDFST 292
           NR +PI++ ++T N   N FST
Sbjct: 349 NRSMPIRRPSLTSNNSANTFST 370


>SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter
           Mfs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 531

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = +2

Query: 74  RRVTVSSLITCIYLPSIIIVISYQGLLYSV 163
           +++ V  +I C+  P ++ +  Y GL+YS+
Sbjct: 304 KQILVRPIILCVSEPIVLSLTIYIGLVYSI 333


>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 747

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +2

Query: 71  LRRVTVSSLITCIYLP-SIIIVISYQG 148
           LRR  V  L +C +LP S+I  +SY G
Sbjct: 693 LRRAAVQLLDSCKHLPDSVITTLSYVG 719


>SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting
           protein homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 455

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 11/48 (22%), Positives = 21/48 (43%)
 Frame = -3

Query: 432 GNTVNKVRSVESINVSSWQSNTGAPNRIIPIKKQNITPNRKINDFSTS 289
           G++   +  +   N   + S     +  I   K+N+TPN  I   +T+
Sbjct: 45  GDSAETIEFISDFNQKRFHSTHSGNSPSIMKNKKNVTPNNNIRQKNTA 92


>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
           Nup132|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1162

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 455 LPHNAKSKGILLIKLEVLKALTFLRGNPI 369
           L H A ++ ++  KLE     +FL GNPI
Sbjct: 448 LEHPANNESLVKSKLEEAVFYSFLPGNPI 476


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 62   QLELRRVTVSSLITCIYLPSIIIVISYQG 148
            Q  L R   + LIT   +PS+++ +SY+G
Sbjct: 2458 QSMLDRAGSNMLITYFKIPSVVLRLSYRG 2486


>SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +2

Query: 197 IFIAELLKSFYLNSTNDIQ*KRAKPNKN 280
           + I EL ++ +LNS N+++   A+ N+N
Sbjct: 303 LLINELNRTSFLNSNNNLKLNEAEENQN 330


>SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 590

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = -1

Query: 305 MILVHRWLCSCSVLLFFIGYHSWNLNKMTLVIQ 207
           M+L  +WL + S+LLF++   +  L+ +T+ IQ
Sbjct: 214 MVLCVQWLANVSLLLFYLKKDN-KLDDLTVDIQ 245


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +2

Query: 104 CIYLPS-IIIVISYQGLLYSVGKGSSFYNLVFIFI 205
           C+++ + I+I++ Y    YSV   S FY L+ +FI
Sbjct: 169 CLFVINHILILLGYFQCSYSVFYASVFYILLGVFI 203


>SPAC2G11.04 |||RNA-binding protein, G-patch type
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 301

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 435 KGNTVNKVRSVESINVSSWQSNTG 364
           K NT NK  +V S+N +  + N+G
Sbjct: 30  KANTPNKTEAVHSLNNTCSEQNSG 53


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = -3

Query: 423 VNKVRSVESINVSSWQSNTGAPNRIIPIKKQNITPNRKINDFSTS 289
           VNK + +ES   +   S     NR     KQ+ TP   +ND S+S
Sbjct: 261 VNKQQQIESPTATFPLSKNTWKNRFHTFHKQSFTP---VNDSSSS 302


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 13/46 (28%), Positives = 17/46 (36%)
 Frame = -3

Query: 459 NSTPQCKIKGNTVNKVRSVESINVSSWQSNTGAPNRIIPIKKQNIT 322
           +STP   +   T     S    +VSS  S T       P+   N T
Sbjct: 304 SSTPLTSVNSTTTTSASSTPLSSVSSANSTTATSTSSTPLSSVNST 349


>SPAC2F3.01 ||SPAC323.09|mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 9/26 (34%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
 Frame = +1

Query: 286 QRCTKIIY--LPIGGYVLFFYWNYSV 357
           ++C K++   +PI G +L   W YS+
Sbjct: 3   RKCRKLLLKGIPICGVILLILWGYSL 28


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,830,070
Number of Sequences: 5004
Number of extensions: 34782
Number of successful extensions: 116
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)