Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_F21
         (461 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83238-11|CAE11318.1|  326|Caenorhabditis elegans Hypothetical p...    29   2.1  
Z92797-4|CAB07238.3|  478|Caenorhabditis elegans Hypothetical pr...    28   3.7  
Z92797-3|CAB07237.2|  445|Caenorhabditis elegans Hypothetical pr...    28   3.7  
Z83118-3|CAB05577.3|  478|Caenorhabditis elegans Hypothetical pr...    28   3.7  
Z83118-2|CAB05576.2|  445|Caenorhabditis elegans Hypothetical pr...    28   3.7  
Z81570-7|CAB04608.2| 4063|Caenorhabditis elegans Hypothetical pr...    27   4.9  
Z75956-5|CAB00130.2| 4063|Caenorhabditis elegans Hypothetical pr...    27   4.9  
AF053496-1|AAC08577.1| 4063|Caenorhabditis elegans beta chain sp...    27   4.9  
AF039053-17|AAC25882.2|  279|Caenorhabditis elegans Serpentine r...    27   4.9  

>Z83238-11|CAE11318.1|  326|Caenorhabditis elegans Hypothetical
           protein T08G3.12 protein.
          Length = 326

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +2

Query: 98  ITCIYLPSIIIVISYQGLLYSVGKGSSFYNLVFIFIAELLKSFYLNST 241
           ITC +L   +  +S   L+YS   G SF  L ++ I  +   FY+ +T
Sbjct: 57  ITCFWLDFNLSTLSIPYLIYSAAAGQSFGILAYLKI-PMSFQFYMGAT 103


>Z92797-4|CAB07238.3|  478|Caenorhabditis elegans Hypothetical
           protein H25P06.2b protein.
          Length = 478

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = -3

Query: 426 TVNKVRSVESINVSSWQSNTGAPNRIIPIKKQNITPNRKIN 304
           ++NK      +N+  W + +  PN  +P  K  I PN+  N
Sbjct: 317 SINKDVWPNCVNMPLWSAMSSEPNSALPQGKYRILPNKMKN 357


>Z92797-3|CAB07237.2|  445|Caenorhabditis elegans Hypothetical
           protein H25P06.2a protein.
          Length = 445

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = -3

Query: 426 TVNKVRSVESINVSSWQSNTGAPNRIIPIKKQNITPNRKIN 304
           ++NK      +N+  W + +  PN  +P  K  I PN+  N
Sbjct: 317 SINKDVWPNCVNMPLWSAMSSEPNSALPQGKYRILPNKMKN 357


>Z83118-3|CAB05577.3|  478|Caenorhabditis elegans Hypothetical
           protein H25P06.2b protein.
          Length = 478

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = -3

Query: 426 TVNKVRSVESINVSSWQSNTGAPNRIIPIKKQNITPNRKIN 304
           ++NK      +N+  W + +  PN  +P  K  I PN+  N
Sbjct: 317 SINKDVWPNCVNMPLWSAMSSEPNSALPQGKYRILPNKMKN 357


>Z83118-2|CAB05576.2|  445|Caenorhabditis elegans Hypothetical
           protein H25P06.2a protein.
          Length = 445

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = -3

Query: 426 TVNKVRSVESINVSSWQSNTGAPNRIIPIKKQNITPNRKIN 304
           ++NK      +N+  W + +  PN  +P  K  I PN+  N
Sbjct: 317 SINKDVWPNCVNMPLWSAMSSEPNSALPQGKYRILPNKMKN 357


>Z81570-7|CAB04608.2| 4063|Caenorhabditis elegans Hypothetical protein
            R31.1 protein.
          Length = 4063

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -3

Query: 429  NTVNKVRSVESINVSSWQSN 370
            N + K R +ES N+S WQSN
Sbjct: 2154 NELMKARHMESKNISMWQSN 2173


>Z75956-5|CAB00130.2| 4063|Caenorhabditis elegans Hypothetical protein
            R31.1 protein.
          Length = 4063

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -3

Query: 429  NTVNKVRSVESINVSSWQSN 370
            N + K R +ES N+S WQSN
Sbjct: 2154 NELMKARHMESKNISMWQSN 2173


>AF053496-1|AAC08577.1| 4063|Caenorhabditis elegans beta chain
            spectrin homolog Sma1 protein.
          Length = 4063

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -3

Query: 429  NTVNKVRSVESINVSSWQSN 370
            N + K R +ES N+S WQSN
Sbjct: 2154 NELMKARHMESKNISMWQSN 2173


>AF039053-17|AAC25882.2|  279|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 16 protein.
          Length = 279

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
 Frame = +2

Query: 155 YSVGKGSSFYNLVFIFIAELLKSFYLNSTNDIQ*KRAKPNKNKASDVLKSFIFLLG-VMF 331
           YS+ KG+++   V   I    K F+LN  +  Q   +K N     D     IF    ++F
Sbjct: 170 YSINKGTAYILTVMFAILLSTKLFFLNKDSTEQKTLSKANLLALIDAANVIIFHFSPILF 229

Query: 332 CF 337
            F
Sbjct: 230 AF 231


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,815,091
Number of Sequences: 27780
Number of extensions: 187869
Number of successful extensions: 567
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 567
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 818426686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)