Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_F16
         (379 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    28   0.56 
SPCC16C4.03 |pin1||peptidyl-prolyl cis-trans isomerase Pin1|Schi...    26   2.3  
SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c...    25   3.9  
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ...    25   5.2  
SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces pom...    24   9.1  
SPBC1539.03c |||argininosuccinate lyase|Schizosaccharomyces pomb...    24   9.1  
SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomy...    24   9.1  

>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 27.9 bits (59), Expect = 0.56
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -3

Query: 236  RIFGKSMDFLSTLIFKSRKIYLRLYICR*YMYCCVG 129
            ++F +S +   +L FK    YL+  IC    +CC G
Sbjct: 2393 KLFTRSSNITESLSFKELCNYLKKKICYILAWCCTG 2428


>SPCC16C4.03 |pin1||peptidyl-prolyl cis-trans isomerase
           Pin1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 175

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 164 TVLNKSYVI*I*ESIKSPYFFQISVHTSLY 253
           T L K +++ I  S   PYFF    H SL+
Sbjct: 4   TGLPKPWIVKISRSRNRPYFFNTETHESLW 33


>SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 300

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +2

Query: 89  HVPRYYFKYISRNDQHSNTYITYKYTVLNKSY 184
           H  ++Y KY    ++  + + +YK T ++KSY
Sbjct: 184 HRRKHYEKYSQCLNKQLDHFFSYKVTTVHKSY 215


>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 24.6 bits (51), Expect = 5.2
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 200 ESIKSPYFFQISVHTSLYSIL 262
           +S+ SP+FF+IS + S Y  L
Sbjct: 165 DSLISPFFFRISPNESAYDYL 185


>SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -2

Query: 357 YRDISIGSHTRNNNNNHFEYVKLD 286
           +RDI +G    + N NHF +++ D
Sbjct: 304 FRDIIVGQLYGHMNINHFVFLEFD 327


>SPBC1539.03c |||argininosuccinate lyase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 460

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -3

Query: 266 NIE*NKGKYGRIFGKSMDFL 207
           ++E  +GK GR+FG  M F+
Sbjct: 292 SLELLRGKSGRVFGNMMGFM 311


>SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 537

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 217 ILFPNIRPYFPLFYSIFDNI 276
           I+FP I  Y  +FY IFD I
Sbjct: 384 IMFPAIILYLIMFYLIFDCI 403


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,610,969
Number of Sequences: 5004
Number of extensions: 32795
Number of successful extensions: 63
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)