Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_F15
(340 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc... 29 0.15
SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4 |Schi... 29 0.26
SPAC13D6.01 |pof14||F-box protein Pof14|Schizosaccharomyces pomb... 28 0.45
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo... 26 1.4
SPCC1753.02c |git3||G-protein coupled receptor Git3|Schizosaccha... 25 3.2
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 4.2
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub... 25 4.2
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||... 24 5.5
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula... 24 5.5
SPCC1795.02c ||SPCC895.01|CaCA proton/calcium exchanger|Schizosa... 24 7.3
SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog |Schizosacchar... 23 9.6
>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1428
Score = 29.5 bits (63), Expect = 0.15
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = +3
Query: 108 KDFKETFSSDSGLNKTNTAFAFSSMNTSV--STIKSTMIEVPPNAESCKQGTYLDNTGVS 281
K FKE + S K NT A + + S IKS +E P +A + K +DN G
Sbjct: 540 KSFKEVYGKFSA-EKQNTDLAEDAKISEKLDSIIKSKELETPTSATTSKLMAPMDNIGKF 598
Query: 282 AGY 290
+G+
Sbjct: 599 SGF 601
>SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 289
Score = 28.7 bits (61), Expect = 0.26
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Frame = +3
Query: 138 SGLNKTNTAFAFSSMN-----TSVSTIKSTMIEVPPNAESCKQGTY 260
SG+N TN+ + S MN TS+S + T A SCK Y
Sbjct: 78 SGMNMTNSTTSMSGMNMSNSTTSMSGMNMTNTTTTAKASSCKLSMY 123
Score = 27.5 bits (58), Expect = 0.59
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = +3
Query: 129 SSDSGLNKTNTAFAFSSMNTSVSTIKSTMIEVPPNAESCKQGTYLDNTGVSA 284
+S SG+N TN+ S MN + ST + + + N+ + G + NT +A
Sbjct: 63 TSMSGMNMTNSTTPMSGMNMTNSTTSMSGMNM-SNSTTSMSGMNMTNTTTTA 113
>SPAC13D6.01 |pof14||F-box protein Pof14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 431
Score = 27.9 bits (59), Expect = 0.45
Identities = 9/41 (21%), Positives = 26/41 (63%)
Frame = +3
Query: 144 LNKTNTAFAFSSMNTSVSTIKSTMIEVPPNAESCKQGTYLD 266
L+ + ++A ++++ S++ S++I+ +SC + TY++
Sbjct: 269 LDPSYQSYAAKTIHSDTSSLASSIIQTGDGTQSCDESTYIE 309
>SPAC110.02 |pds5||cohesin-associated protein
Pds5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1205
Score = 26.2 bits (55), Expect = 1.4
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Frame = +3
Query: 27 IVFNLFICAYTAPFSVQDILDVFGSPIKDFKETFSSDSGL-NKTNTAF-AFSSMNTSVST 200
IV L +CA APF++ + D+F +K SGL N+ +T + + S+S
Sbjct: 75 IVELLRLCAPDAPFTLSQLEDIFQVILKIL-------SGLMNQESTYYPQIYEILESLSN 127
Query: 201 IKSTMIEVP-PNAE 239
+KS ++ V PNAE
Sbjct: 128 VKSAVLIVDLPNAE 141
>SPCC1753.02c |git3||G-protein coupled receptor
Git3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 466
Score = 25.0 bits (52), Expect = 3.2
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = -1
Query: 214 IVLLIVLTD--VFIELNANAVLVLFNPLSDENVSLKSF 107
+++L+ +TD +FI + NA+LVLF + E L F
Sbjct: 105 LLVLVRMTDYWIFINILHNALLVLFPHVDTERRGLYRF 142
>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 780
Score = 24.6 bits (51), Expect = 4.2
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +3
Query: 117 KETFSSDSGLNKTNTAFAFSSMNTSVSTIKSTMIEVPPNAES 242
+ETF SG+NK+ + F+ +++S+ + I N +S
Sbjct: 113 EETFPLTSGMNKSVHEYPFTLSESAISSSHKSSIPERRNFDS 154
>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 838
Score = 24.6 bits (51), Expect = 4.2
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +3
Query: 108 KDFKETFSSDSGLNKTNTAFAFSSMNTSVSTIKSTMIEVPPNAE 239
KDFKET + + A + N +++T S M E P +E
Sbjct: 426 KDFKETEDMNGAEDMHGRAPQITKDNLNLTTTDSPMSEAEPVSE 469
>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1116
Score = 24.2 bits (50), Expect = 5.5
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +3
Query: 129 SSDSGLNKTNTAFAFSSMNTSVSTIKS 209
SSD +TN+ F S+ N+S+ + +S
Sbjct: 122 SSDDVFTETNSGFRSSNQNSSLKSFQS 148
>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1400
Score = 24.2 bits (50), Expect = 5.5
Identities = 19/67 (28%), Positives = 29/67 (43%)
Frame = +3
Query: 30 VFNLFICAYTAPFSVQDILDVFGSPIKDFKETFSSDSGLNKTNTAFAFSSMNTSVSTIKS 209
V NL +TA + + VF + F T D + N ++F+ VST +S
Sbjct: 798 VNNLLQQYFTAIYKFEGCGSVFPFVVDPFT-TILDDVLSFEANKVYSFAISLMKVSTFES 856
Query: 210 TMIEVPP 230
E+PP
Sbjct: 857 CTKELPP 863
>SPCC1795.02c ||SPCC895.01|CaCA proton/calcium
exchanger|Schizosaccharomyces pombe|chr 3|||Manual
Length = 412
Score = 23.8 bits (49), Expect = 7.3
Identities = 17/45 (37%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Frame = -1
Query: 229 GGTSIIVLLIVLTDVFIELNANAVLVLFNPLSDE-NVSLKSFIGL 98
G S I +L ++T VF+ L A+ ++ + L +E N+S K+F+GL
Sbjct: 261 GLRSSIAMLAIVT-VFVSLCADYLVGSIDQLVEEVNIS-KTFVGL 303
>SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 478
Score = 23.4 bits (48), Expect = 9.6
Identities = 14/30 (46%), Positives = 14/30 (46%)
Frame = +3
Query: 63 PFSVQDILDVFGSPIKDFKETFSSDSGLNK 152
P S DIL P KD K S SGL K
Sbjct: 439 PSSFTDILTQKTIPCKDHKLKIKSKSGLPK 468
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,300,808
Number of Sequences: 5004
Number of extensions: 21797
Number of successful extensions: 91
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 98026656
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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