Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_F15
(340 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0465 + 25427065-25427113,25428099-25428227,25428387-254284... 29 0.93
06_03_1496 - 30567968-30568210,30568345-30568513,30568635-305687... 28 2.1
06_03_0227 - 18425790-18425890,18426046-18426114,18426296-18426533 28 2.1
06_03_0224 - 18404166-18404266,18404380-18404448,18405788-18405872 28 2.1
06_03_0222 - 18378892-18378992,18379106-18379174,18379356-18379593 28 2.1
10_08_0537 - 18625440-18626804 27 2.8
09_04_0551 - 18488584-18490017 26 6.6
08_02_0918 - 22617388-22617693,22617799-22617848,22618538-226188... 26 6.6
05_03_0584 + 15753216-15753464,15754267-15754479,15754578-15754703 26 6.6
02_04_0312 - 21942310-21943356 26 6.6
07_03_1622 + 28193862-28195181 26 8.7
07_01_0429 + 3275861-3275964,3276065-3276218,3276306-3276422 26 8.7
03_05_0001 - 19386264-19386284,19386446-19386517,19386614-193873... 26 8.7
01_06_0133 - 26793335-26793380,26793696-26793907,26794009-267941... 26 8.7
>04_04_0465 +
25427065-25427113,25428099-25428227,25428387-25428479,
25428681-25428953,25429037-25429288,25429735-25430118,
25430243-25430483,25431986-25432736
Length = 723
Score = 29.1 bits (62), Expect = 0.93
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +3
Query: 129 SSDSGLNKTNTAFAFSSMNTSVSTIKSTMIEVPPNAES 242
S+ S KT +FSSM +S ++ ST+ PP ++
Sbjct: 257 SNSSATRKTGMRSSFSSMTSSTASFVSTIATCPPTVKT 294
>06_03_1496 - 30567968-30568210,30568345-30568513,30568635-30568736,
30569087-30571855,30572402-30572430,30572546-30572659,
30572735-30572846,30574730-30574845,30574928-30575068,
30575121-30575243,30575346-30575478,30575842-30575972,
30576065-30576300,30577073-30577376
Length = 1573
Score = 27.9 bits (59), Expect = 2.1
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +3
Query: 45 IC-AYTAPFSVQDILDVFGSPIKDFKETFSSDS 140
+C AY A V+D+ + G P+ DF++ SS S
Sbjct: 1205 VCDAYRAQQRVEDVQVIIGRPLADFEQFISSAS 1237
>06_03_0227 - 18425790-18425890,18426046-18426114,18426296-18426533
Length = 135
Score = 27.9 bits (59), Expect = 2.1
Identities = 10/33 (30%), Positives = 15/33 (45%)
Frame = -3
Query: 284 CRYSCVIQVCTLLATLRIRWYFNHSTLNCTNRC 186
C+ C VC+ ++TL NH+ C C
Sbjct: 88 CKLGCASSVCSTMSTLFANEEANHAVDRCNEAC 120
>06_03_0224 - 18404166-18404266,18404380-18404448,18405788-18405872
Length = 84
Score = 27.9 bits (59), Expect = 2.1
Identities = 10/33 (30%), Positives = 15/33 (45%)
Frame = -3
Query: 284 CRYSCVIQVCTLLATLRIRWYFNHSTLNCTNRC 186
C+ C VC+ ++TL NH+ C C
Sbjct: 37 CKLGCASSVCSTMSTLFANEEANHAVDRCNEAC 69
>06_03_0222 - 18378892-18378992,18379106-18379174,18379356-18379593
Length = 135
Score = 27.9 bits (59), Expect = 2.1
Identities = 10/33 (30%), Positives = 15/33 (45%)
Frame = -3
Query: 284 CRYSCVIQVCTLLATLRIRWYFNHSTLNCTNRC 186
C+ C VC+ ++TL NH+ C C
Sbjct: 88 CKLGCASSVCSTMSTLFANEEANHAVDRCNEAC 120
>10_08_0537 - 18625440-18626804
Length = 454
Score = 27.5 bits (58), Expect = 2.8
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 30 VFNLFICAYTAPFSVQDILDVF 95
VFN+ ICAYT V +++ VF
Sbjct: 184 VFNILICAYTKQEKVDEVVLVF 205
>09_04_0551 - 18488584-18490017
Length = 477
Score = 26.2 bits (55), Expect = 6.6
Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = -1
Query: 205 LIVLTDVFIELNANAVLVLFNP-LSDENVSLKSFIGLPNTSKMSCT 71
++VL DVF++ + L NP + D++ + + + +SK S T
Sbjct: 19 MMVLADVFLDHGYAVAVALINPSVKDDDAAFTAAVARAVSSKSSAT 64
>08_02_0918 -
22617388-22617693,22617799-22617848,22618538-22618817,
22619654-22620340,22622870-22622944,22623150-22623285,
22624801-22625093,22625776-22626597
Length = 882
Score = 26.2 bits (55), Expect = 6.6
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = -2
Query: 303 LNHHGILQILLCYPSMYLACNSPHSVVLQ 217
LN G+L++L YPS C++ +++ +
Sbjct: 324 LNKAGVLRVLSVYPSSGSTCSNEQTIITE 352
>05_03_0584 + 15753216-15753464,15754267-15754479,15754578-15754703
Length = 195
Score = 26.2 bits (55), Expect = 6.6
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Frame = -1
Query: 235 AFGGTSIIVLLIVLTDVFIEL--NANAVLVLFNPLSDENVSLKSFIGLPNTSKMSCT--E 68
AF G S+ I+ T I + N N V V P S+ + S+ + NTS+ +CT
Sbjct: 88 AFRGNSLDYKDIIYTAKSISVCSNRNEVHVFMPPRSNFQDTKASYRLIGNTSRRACTIIS 147
Query: 67 NGAVYAQINKL 35
++ +Q N L
Sbjct: 148 GDSIVSQTNLL 158
>02_04_0312 - 21942310-21943356
Length = 348
Score = 26.2 bits (55), Expect = 6.6
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = -1
Query: 220 SIIVLLIVLTDVFIELNANAVLVLFNPLSDEN 125
SI + V VFI L A A L LF PL D++
Sbjct: 41 SISFFMAVFFPVFIVLLAFACLRLFRPLDDDD 72
>07_03_1622 + 28193862-28195181
Length = 439
Score = 25.8 bits (54), Expect = 8.7
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -1
Query: 334 RTTSQRV*YMTKSPWYPADTPVLSKYVPCL 245
R + V Y+ +PW AD + + +PCL
Sbjct: 116 RVAAACVDYLESAPWDEADEEEILRTIPCL 145
>07_01_0429 + 3275861-3275964,3276065-3276218,3276306-3276422
Length = 124
Score = 25.8 bits (54), Expect = 8.7
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +3
Query: 210 TMIEVPPNAESCKQGTYLDNTGVSAGY 290
T+ E+ P++ES +QG L TGV Y
Sbjct: 13 TLQELEPSSESFRQGASLRVTGVLQSY 39
>03_05_0001 - 19386264-19386284,19386446-19386517,19386614-19387357,
19387454-19388884,19388953-19389118,19392035-19392114,
19392393-19392462,19392550-19392761,19392837-19392890,
19393471-19393623,19393715-19393930,19394029-19394248,
19394332-19394399,19394510-19394643,19394755-19394854,
19394943-19395421,19395506-19395699,19396270-19396355,
19396364-19396444,19396842-19397023,19397305-19397346,
19398247-19398558,19399374-19399434,19399435-19399617,
19399744-19399863,19400380-19401051,19402597-19402668,
19402742-19402865,19403563-19403651,19405023-19405097
Length = 2170
Score = 25.8 bits (54), Expect = 8.7
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +3
Query: 189 SVSTIKSTMIEVPPNAESCKQGTYLDNTGVSAGYHG-DLVIY 311
S ++T+ ++PPN + L + VS+G HG D +Y
Sbjct: 1791 STHAAQATLRQLPPNMHRKRSPHKLAESSVSSGSHGHDRTLY 1832
>01_06_0133 -
26793335-26793380,26793696-26793907,26794009-26794134,
26794258-26794335,26794857-26795014,26795230-26795278,
26795369-26795414,26795527-26795654,26796154-26796237,
26796317-26796409,26796505-26796549,26796792-26796851
Length = 374
Score = 25.8 bits (54), Expect = 8.7
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -1
Query: 307 MTKSPWYPADTPVLSKYVPCLQLSAFGGTSII 212
M K+P P D P LS Y+ + A+ G I+
Sbjct: 12 MGKAPSPPKDHPALSPYLDWSNMQAYYGPGIL 43
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,949,067
Number of Sequences: 37544
Number of extensions: 126143
Number of successful extensions: 386
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 386
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 470052804
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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