Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_F15
(340 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U97190-1|AAB52366.2| 495|Caenorhabditis elegans Cop-9 signaloso... 30 0.49
U43283-2|AAC69020.1| 205|Caenorhabditis elegans Rab family prot... 29 1.1
Z12017-9|CAA78053.1| 537|Caenorhabditis elegans Hypothetical pr... 27 3.4
Z11505-11|CAA77591.1| 537|Caenorhabditis elegans Hypothetical p... 27 3.4
U68254-1|AAB16969.1| 67|Caenorhabditis elegans rab6-like protein. 27 3.4
Z93393-11|CAB07698.2| 536|Caenorhabditis elegans Hypothetical p... 27 4.5
AF088285-1|AAC98292.1| 536|Caenorhabditis elegans caspase-relat... 27 4.5
U42436-3|AAL02471.1| 498|Caenorhabditis elegans Hypothetical pr... 26 6.0
Z22181-4|CAA80182.1| 824|Caenorhabditis elegans Hypothetical pr... 26 7.9
AF016447-13|AAG24017.1| 334|Caenorhabditis elegans Serpentine r... 26 7.9
>U97190-1|AAB52366.2| 495|Caenorhabditis elegans Cop-9 signalosome
subunit protein 2 protein.
Length = 495
Score = 29.9 bits (64), Expect = 0.49
Identities = 14/52 (26%), Positives = 28/52 (53%)
Frame = +3
Query: 129 SSDSGLNKTNTAFAFSSMNTSVSTIKSTMIEVPPNAESCKQGTYLDNTGVSA 284
+ D G K+++ SS ++ +++ S++++ PP SC Q +D V A
Sbjct: 428 AGDQGTTKSDSKPGTSSEPSTTTSVTSSILQGPPATSSCHQELSMDGLRVWA 479
>U43283-2|AAC69020.1| 205|Caenorhabditis elegans Rab family protein
6.2 protein.
Length = 205
Score = 28.7 bits (61), Expect = 1.1
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Frame = +3
Query: 93 FGSPIKDFKETFSSDSGLNKTN--TAFAFSSM-NTSVSTI 203
FG+P+K FK F + + KT+ T F + S NT +TI
Sbjct: 4 FGNPLKKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATI 43
>Z12017-9|CAA78053.1| 537|Caenorhabditis elegans Hypothetical
protein R08D7.7 protein.
Length = 537
Score = 27.1 bits (57), Expect = 3.4
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Frame = -1
Query: 223 TSIIVLLIVLTDVFIELNANAVLVLFNPLSDENVSLKSFIGL-PNTSKMS--CTENGAV 56
+S+ L ++ TD+ I L + + F P + N+ F PN+ M+ C +NG++
Sbjct: 277 SSLAGLSLLPTDIGISLGTSDTVFFFTPTFEPNIDAHVFSHFAPNSGYMAMVCFKNGSL 335
>Z11505-11|CAA77591.1| 537|Caenorhabditis elegans Hypothetical
protein R08D7.7 protein.
Length = 537
Score = 27.1 bits (57), Expect = 3.4
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Frame = -1
Query: 223 TSIIVLLIVLTDVFIELNANAVLVLFNPLSDENVSLKSFIGL-PNTSKMS--CTENGAV 56
+S+ L ++ TD+ I L + + F P + N+ F PN+ M+ C +NG++
Sbjct: 277 SSLAGLSLLPTDIGISLGTSDTVFFFTPTFEPNIDAHVFSHFAPNSGYMAMVCFKNGSL 335
>U68254-1|AAB16969.1| 67|Caenorhabditis elegans rab6-like protein.
Length = 67
Score = 27.1 bits (57), Expect = 3.4
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Frame = +3
Query: 93 FGSPIKDFKETFSSDSGLNKTN--TAFAFSSM-NTSVSTI 203
FG+P+K F+ F + + KT+ T F + S NT +TI
Sbjct: 4 FGNPLKKFELVFLGEQSVGKTSLITRFMYDSFDNTYQATI 43
>Z93393-11|CAB07698.2| 536|Caenorhabditis elegans Hypothetical
protein Y48E1B.13a protein.
Length = 536
Score = 26.6 bits (56), Expect = 4.5
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = +3
Query: 117 KETFSSD--SGLNKTNTAFAFSSMNTSVSTIKSTMIEVPPNAESCKQGTYLD 266
K F D N T + SS +T++ST IE+ E C+ G+Y +
Sbjct: 11 KSQFDDDLVEDFNNFQTTSSMSS-STTISTEDFNTIEIESTFEICRSGSYTE 61
>AF088285-1|AAC98292.1| 536|Caenorhabditis elegans caspase-related
protein 1A protein.
Length = 536
Score = 26.6 bits (56), Expect = 4.5
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = +3
Query: 117 KETFSSD--SGLNKTNTAFAFSSMNTSVSTIKSTMIEVPPNAESCKQGTYLD 266
K F D N T + SS +T++ST IE+ E C+ G+Y +
Sbjct: 11 KSQFDDDLVEDFNNFQTTSSMSS-STTISTEDFNTIEIESTFEICRSGSYTE 61
>U42436-3|AAL02471.1| 498|Caenorhabditis elegans Hypothetical
protein C49H3.6b protein.
Length = 498
Score = 26.2 bits (55), Expect = 6.0
Identities = 17/74 (22%), Positives = 31/74 (41%)
Frame = +3
Query: 63 PFSVQDILDVFGSPIKDFKETFSSDSGLNKTNTAFAFSSMNTSVSTIKSTMIEVPPNAES 242
P S ++ SP+K S + + + +A + TSV T S ++ + P+ E
Sbjct: 399 PASSSNVPRTMSSPVKKTPVMGVSSTAVRRPQSAATTTMPTTSVITNTSAVMPLSPDLEQ 458
Query: 243 CKQGTYLDNTGVSA 284
+ N G S+
Sbjct: 459 LEAAIQSMNAGPSS 472
>Z22181-4|CAA80182.1| 824|Caenorhabditis elegans Hypothetical
protein ZK632.5 protein.
Length = 824
Score = 25.8 bits (54), Expect = 7.9
Identities = 11/46 (23%), Positives = 25/46 (54%)
Frame = +3
Query: 81 ILDVFGSPIKDFKETFSSDSGLNKTNTAFAFSSMNTSVSTIKSTMI 218
+L + + + + ET +S++ + +AF MNT++ I+ M+
Sbjct: 640 VLRMLHTALNEVLETRNSETLTREPRLRYAFFHMNTTIFAIRKNML 685
>AF016447-13|AAG24017.1| 334|Caenorhabditis elegans Serpentine
receptor, class h protein268 protein.
Length = 334
Score = 25.8 bits (54), Expect = 7.9
Identities = 11/50 (22%), Positives = 26/50 (52%)
Frame = -1
Query: 310 YMTKSPWYPADTPVLSKYVPCLQLSAFGGTSIIVLLIVLTDVFIELNANA 161
Y+ K+P + + + +PC+ ++ F ++V ++V+T +L A
Sbjct: 173 YIRKAPIFVISFDLRTITLPCMIIAGFFVVEVVVFVVVMTRGMSKLKQTA 222
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,190,582
Number of Sequences: 27780
Number of extensions: 124456
Number of successful extensions: 450
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 450
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 429601520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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