Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_F13
         (318 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr...    27   0.91 
SPAC8F11.10c |pvg1|SPACUNK4.18|pyruvyltransferase |Schizosacchar...    26   1.2  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    25   2.8  
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    24   4.8  
SPCC965.07c |gst2||glutathione S-transferase Gst2|Schizosaccharo...    24   6.4  
SPBC651.09c |||RNA polymerase II associated Paf1 complex |Schizo...    23   8.5  
SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr 2|||...    23   8.5  

>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 501

 Score = 26.6 bits (56), Expect = 0.91
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 9   PGDSPPRPSTSKQTPVKPARL 71
           P  + P+ ST++ TPVKPA L
Sbjct: 342 PRHTKPKLSTTQSTPVKPASL 362


>SPAC8F11.10c |pvg1|SPACUNK4.18|pyruvyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 401

 Score = 26.2 bits (55), Expect = 1.2
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 248 FILAGGTCALFVVAVMRSSEQFLRSAPSET 159
           F+LA  +C LF+  V R+  Q L++  S T
Sbjct: 14  FLLAAVSCTLFIYGVTRTDLQTLKNPSSLT 43


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1562

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +3

Query: 183 KLLAGSHHSDDEEGTSPASEDEGVEGTLVR 272
           KL++ S  SDD +G +   + E ++GT ++
Sbjct: 715 KLVSTSQKSDDLDGEAKPPQLENIQGTTIQ 744


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 26   PTFHLETDPGQTCAPLHAGNEF 91
            PT ++E DPG T    H GN+F
Sbjct: 1173 PT-NIEHDPGCTLKKRHIGNDF 1193


>SPCC965.07c |gst2||glutathione S-transferase
           Gst2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 230

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -3

Query: 148 DLLRDRDFTLPELEGVAGVELVPGVERRAGLTG 50
           D+L+DRD+ +     +A +  +P      GL G
Sbjct: 149 DILKDRDYLVANKYTIADLSFIPWNYNLGGLFG 181


>SPBC651.09c |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 198 SHHSDDEEGTSPASEDEGVE 257
           S  S++EEG SP+  +E VE
Sbjct: 187 SEKSEEEEGYSPSYAEEKVE 206


>SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 4/28 (14%)
 Frame = -2

Query: 263 CPLNTFILAG----GTCALFVVAVMRSS 192
           CP N F+LA     GTC L+ +  + SS
Sbjct: 198 CPKNEFVLASGSADGTCRLWDIRKVSSS 225


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,008,048
Number of Sequences: 5004
Number of extensions: 14680
Number of successful extensions: 52
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 85983492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)