Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_F13
(318 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0906 + 8799284-8799441,8800865-8801690,8801933-8802055,880... 29 1.0
01_06_0669 - 31063722-31063856,31064001-31064090,31064275-310643... 29 1.0
11_01_0319 - 2396835-2396951,2397035-2397105,2397219-2397297,239... 27 2.4
06_01_0415 + 2958746-2959110,2960468-2960593,2961314-2961998 27 2.4
10_08_0520 - 18495118-18498237 27 3.2
09_04_0377 + 17086775-17088310 27 3.2
06_03_0530 + 21807464-21807685,21807809-21808207,21808312-21808818 27 4.2
06_03_1097 - 27570037-27570262,27570575-27570730,27570763-275708... 26 5.6
04_01_0154 - 1775693-1775942,1776834-1777588 26 5.6
03_03_0150 + 14872035-14872472,14874895-14875725 26 7.4
05_03_0471 - 14455543-14455650,14455925-14456002,14456121-144562... 25 9.7
02_01_0447 - 3220489-3220560,3221287-3221420,3221500-3221731,322... 25 9.7
01_05_0242 + 19828521-19829252 25 9.7
>12_01_0906 +
8799284-8799441,8800865-8801690,8801933-8802055,
8802144-8802210,8802611-8802714,8802798-8802900,
8803103-8803401,8804009-8804263,8805471-8805776,
8805866-8806194,8806829-8806916,8807027-8807164,
8807438-8807458
Length = 938
Score = 28.7 bits (61), Expect = 1.0
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +3
Query: 180 KKLLAGSHHSDDEEGTSPASEDEGVE 257
K+ + G+ SDDEEG+ AS+++ E
Sbjct: 480 KRSILGAESSDDEEGSDDASDEDAEE 505
>01_06_0669 -
31063722-31063856,31064001-31064090,31064275-31064356,
31064448-31064494,31065074-31065130,31065368-31065433,
31065537-31065558,31065641-31065753,31065903-31065974,
31066839-31066961,31067052-31067141,31067504-31067545,
31067791-31067878,31069167-31069286,31069382-31069434
Length = 399
Score = 28.7 bits (61), Expect = 1.0
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +1
Query: 175 LRRNCSLDRITATTKRAQVPPARMK 249
LR NCS+ TA+ A PPAR K
Sbjct: 35 LRLNCSVAEATASGDEAPAPPARKK 59
>11_01_0319 -
2396835-2396951,2397035-2397105,2397219-2397297,
2397417-2397458,2397670-2397723,2397836-2397868,
2397959-2398039,2398144-2398230,2398313-2398388,
2398633-2398808,2398912-2399034,2399249-2399361,
2399521-2399632,2400054-2400273,2401986-2402314,
2402408-2402713,2403580-2403878,2404079-2404181,
2404266-2404369,2404840-2404906,2404911-2405076,
2405241-2405956
Length = 1157
Score = 27.5 bits (58), Expect = 2.4
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +3
Query: 180 KKLLAGSHHSDDEEGTSPASEDEGVE 257
K+ + G+ SDDEEG+ +S+++ E
Sbjct: 405 KRSILGAESSDDEEGSDDSSDEDAEE 430
>06_01_0415 + 2958746-2959110,2960468-2960593,2961314-2961998
Length = 391
Score = 27.5 bits (58), Expect = 2.4
Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Frame = +2
Query: 8 AGGFPAPTFHLETDPGQTCAPL--HAGNEFDARDA 106
AGGF P +H E DP PL HA RDA
Sbjct: 357 AGGFDYPLYHGEVDPHLPFPPLFGHASMYGQYRDA 391
>10_08_0520 - 18495118-18498237
Length = 1039
Score = 27.1 bits (57), Expect = 3.2
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = +3
Query: 3 TRPGDSPPRPSTSKQTPVKPAR 68
T P PP P S Q P +PAR
Sbjct: 86 TTPAAPPPPPPPSAQPPARPAR 107
>09_04_0377 + 17086775-17088310
Length = 511
Score = 27.1 bits (57), Expect = 3.2
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +3
Query: 201 HHSDDEEGTSPASEDEGVEGTLVRKHEWESAAKRASNR 314
HHS D EG + +E EG+ + + K+ S R
Sbjct: 233 HHSSDTEGDDNSKAEEDSEGSYDSEDSMDRRKKKRSRR 270
>06_03_0530 + 21807464-21807685,21807809-21808207,21808312-21808818
Length = 375
Score = 26.6 bits (56), Expect = 4.2
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 175 LRRNCSLDRITATTKRAQVPPARMKVLR 258
L+ +C L ++ A K + VP A+MK+ R
Sbjct: 112 LQASCGLAKVVAGGKWSAVPAAKMKITR 139
>06_03_1097 -
27570037-27570262,27570575-27570730,27570763-27570881,
27572154-27572236,27574991-27575041,27575218-27575674,
27576139-27576228,27576672-27576701
Length = 403
Score = 26.2 bits (55), Expect = 5.6
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -2
Query: 263 CPLNTFILAGGTCAL 219
CP + F LAGGTCA+
Sbjct: 277 CPDDGFALAGGTCAV 291
>04_01_0154 - 1775693-1775942,1776834-1777588
Length = 334
Score = 26.2 bits (55), Expect = 5.6
Identities = 13/60 (21%), Positives = 24/60 (40%)
Frame = -1
Query: 261 SPQHLHPRWRDLCPLRRRCDAIQRAVSSQCAIGNSXXXXXXXXXTSPYRNSKASRASNSF 82
S + PRWR R QR ++ Q A+G+ +R + + ++S+
Sbjct: 139 SSRRRRPRWRGNVARRSSSAGTQRRLTGQTAVGDGGEGRARRGARGSWRRRRLATGASSW 198
>03_03_0150 + 14872035-14872472,14874895-14875725
Length = 422
Score = 25.8 bits (54), Expect = 7.4
Identities = 18/48 (37%), Positives = 22/48 (45%)
Frame = -3
Query: 163 KLLNGDLLRDRDFTLPELEGVAGVELVPGVERRAGLTGVCFEVEGRGG 20
+L G+L PE EG G ++ GV GL G EVE GG
Sbjct: 153 QLRQGNLAPGAVSDSPEPEG--GRDVQAGVHEARGLAGGVQEVEAHGG 198
>05_03_0471 -
14455543-14455650,14455925-14456002,14456121-14456285,
14457151-14457261,14457863-14458024,14458462-14458538,
14459526-14460177
Length = 450
Score = 25.4 bits (53), Expect = 9.7
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -2
Query: 263 CPLNTFILAGGTCALFVVAVMRSSEQFLRSAPSETPERRLA 141
C + I++G +++ AVM S LR + ER++A
Sbjct: 209 CSCHCVIISGFFVTIWIAAVMFKSNDILRKQTALKGERKIA 249
>02_01_0447 -
3220489-3220560,3221287-3221420,3221500-3221731,
3221817-3222015,3222101-3222181,3222260-3222315,
3222493-3222623,3222700-3222847,3224151-3224321,
3224417-3224775,3224898-3225189
Length = 624
Score = 25.4 bits (53), Expect = 9.7
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = +1
Query: 202 ITATTKRAQVPPARMKVLRGH*YANTNGSLRL 297
+ A++KR + P K++ +AN NG+L++
Sbjct: 446 LVASSKRPDIQPLHDKMIIKQNFANENGNLQI 477
>01_05_0242 + 19828521-19829252
Length = 243
Score = 25.4 bits (53), Expect = 9.7
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -3
Query: 70 RRAGLTGVCFEVEGRGGESPGL 5
RR GL G C GRGG G+
Sbjct: 64 RRKGLPGECRRDRGRGGAGDGV 85
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,706,808
Number of Sequences: 37544
Number of extensions: 124616
Number of successful extensions: 568
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 567
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 398975940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -