Samia BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_F13
         (318 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha ...    26   0.39 
AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha ...    23   2.1  
AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcript...    23   3.6  

>AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha 1
           chain protein.
          Length = 1024

 Score = 25.8 bits (54), Expect = 0.39
 Identities = 18/47 (38%), Positives = 24/47 (51%)
 Frame = -3

Query: 157 LNGDLLRDRDFTLPELEGVAGVELVPGVERRAGLTGVCFEVEGRGGE 17
           LNG      D  +P LEGVAG+  + G +   GL G+   + G  GE
Sbjct: 655 LNGPQGMKGDRGMPGLEGVAGLPGMVGEKGDRGLPGMS-GLNGAPGE 700



 Score = 23.8 bits (49), Expect = 1.6
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = -3

Query: 130 DFTLPELEGVAGVELVPGVERRAGLTG 50
           D  LP L G AG+   PG     GL G
Sbjct: 729 DKGLPGLAGPAGIPGAPGAPGEMGLRG 755


>AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha 1
           chain precursor protein.
          Length = 801

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 18/46 (39%), Positives = 20/46 (43%)
 Frame = -3

Query: 151 GDLLRDRDFTLPELEGVAGVELVPGVERRAGLTGVCFEVEGRGGES 14
           GD  RD     P + G  GV  VPG    AG  G C   +G  G S
Sbjct: 148 GDRGRDGLPGYPGIPGTNGVPGVPGAPGLAGRDG-CNGTDGLPGLS 192



 Score = 23.0 bits (47), Expect = 2.8
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = -3

Query: 118 PELEGVAGVELVPGVERRAGLTGVCFEVE 32
           P   G  GV   PGV    G  GVC + E
Sbjct: 252 PGRPGEKGVPGTPGVRGERGDKGVCIKGE 280


>AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1154

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -3

Query: 109 EGVAGVELVPGVE 71
           +GV GVEL PG E
Sbjct: 656 DGVLGVELPPGAE 668


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 266,957
Number of Sequences: 2352
Number of extensions: 4737
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 563,979
effective HSP length: 56
effective length of database: 432,267
effective search space used: 21181083
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)