Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_F13
(318 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U64854-1|AAK77612.2| 2302|Caenorhabditis elegans Uncoordinated p... 38 0.002
AF166169-1|AAD49858.1| 2302|Caenorhabditis elegans beta-G spectr... 38 0.002
U64854-2|AAK77611.1| 2257|Caenorhabditis elegans Uncoordinated p... 37 0.004
AF261891-1|AAF72996.1| 2257|Caenorhabditis elegans beta-spectrin... 37 0.004
AF166170-1|AAD49859.1| 2257|Caenorhabditis elegans beta-G spectr... 37 0.004
Z19152-7|CAA79539.2| 643|Caenorhabditis elegans Hypothetical pr... 27 3.9
Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical pr... 26 6.8
Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical pr... 26 6.8
X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) coll... 26 6.8
U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical p... 26 6.8
>U64854-1|AAK77612.2| 2302|Caenorhabditis elegans Uncoordinated
protein 70, isoform b protein.
Length = 2302
Score = 37.9 bits (84), Expect = 0.002
Identities = 16/35 (45%), Positives = 23/35 (65%)
Frame = +3
Query: 213 DEEGTSPASEDEGVEGTLVRKHEWESAAKRASNRS 317
D + A + E EGTL+RKH +ES ++A+NRS
Sbjct: 2152 DSKDPKGAKQGEAFEGTLIRKHTYESLDRKAANRS 2186
>AF166169-1|AAD49858.1| 2302|Caenorhabditis elegans beta-G spectrin
protein.
Length = 2302
Score = 37.9 bits (84), Expect = 0.002
Identities = 16/35 (45%), Positives = 23/35 (65%)
Frame = +3
Query: 213 DEEGTSPASEDEGVEGTLVRKHEWESAAKRASNRS 317
D + A + E EGTL+RKH +ES ++A+NRS
Sbjct: 2152 DSKDPKGAKQGEAFEGTLIRKHTYESLDRKAANRS 2186
>U64854-2|AAK77611.1| 2257|Caenorhabditis elegans Uncoordinated
protein 70, isoform a protein.
Length = 2257
Score = 36.7 bits (81), Expect = 0.004
Identities = 15/28 (53%), Positives = 21/28 (75%)
Frame = +3
Query: 234 ASEDEGVEGTLVRKHEWESAAKRASNRS 317
A + E EGTL+RKH +ES ++A+NRS
Sbjct: 2114 AKQGEAFEGTLIRKHTYESLDRKAANRS 2141
>AF261891-1|AAF72996.1| 2257|Caenorhabditis elegans beta-spectrin
protein.
Length = 2257
Score = 36.7 bits (81), Expect = 0.004
Identities = 15/28 (53%), Positives = 21/28 (75%)
Frame = +3
Query: 234 ASEDEGVEGTLVRKHEWESAAKRASNRS 317
A + E EGTL+RKH +ES ++A+NRS
Sbjct: 2114 AKQGEAFEGTLIRKHTYESLDRKAANRS 2141
>AF166170-1|AAD49859.1| 2257|Caenorhabditis elegans beta-G spectrin
protein.
Length = 2257
Score = 36.7 bits (81), Expect = 0.004
Identities = 15/28 (53%), Positives = 21/28 (75%)
Frame = +3
Query: 234 ASEDEGVEGTLVRKHEWESAAKRASNRS 317
A + E EGTL+RKH +ES ++A+NRS
Sbjct: 2114 AKQGEAFEGTLIRKHTYESLDRKAANRS 2141
>Z19152-7|CAA79539.2| 643|Caenorhabditis elegans Hypothetical
protein B0464.6 protein.
Length = 643
Score = 26.6 bits (56), Expect = 3.9
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +3
Query: 21 PPRPSTSKQTPVKP 62
PPRP +SK TP+ P
Sbjct: 138 PPRPESSKSTPIVP 151
>Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical protein
K04H4.1b protein.
Length = 1502
Score = 25.8 bits (54), Expect = 6.8
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = -3
Query: 109 EGVAGVELVPGVERRAGLTGVCFEVEGRGGESPG 8
+G+ G VPGVE GL G C E +G G +PG
Sbjct: 1082 DGLPGAPGVPGVEGVPGLEGDCGE-DGYPG-APG 1113
Score = 25.8 bits (54), Expect = 6.8
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -3
Query: 121 LPELEGVAGVELVPGVERRAGLTG 50
LP GV GVE VPG+E G G
Sbjct: 1084 LPGAPGVPGVEGVPGLEGDCGEDG 1107
>Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical protein
K04H4.1a protein.
Length = 1759
Score = 25.8 bits (54), Expect = 6.8
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = -3
Query: 109 EGVAGVELVPGVERRAGLTGVCFEVEGRGGESPG 8
+G+ G VPGVE GL G C E +G G +PG
Sbjct: 1339 DGLPGAPGVPGVEGVPGLEGDCGE-DGYPG-APG 1370
Score = 25.8 bits (54), Expect = 6.8
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -3
Query: 121 LPELEGVAGVELVPGVERRAGLTG 50
LP GV GVE VPG+E G G
Sbjct: 1341 LPGAPGVPGVEGVPGLEGDCGEDG 1364
>X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) collagen
protein.
Length = 1758
Score = 25.8 bits (54), Expect = 6.8
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = -3
Query: 109 EGVAGVELVPGVERRAGLTGVCFEVEGRGGESPG 8
+G+ G VPGVE GL G C E +G G +PG
Sbjct: 1338 DGLPGAPGVPGVEGVPGLEGDCGE-DGYPG-APG 1369
Score = 25.8 bits (54), Expect = 6.8
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -3
Query: 121 LPELEGVAGVELVPGVERRAGLTG 50
LP GV GVE VPG+E G G
Sbjct: 1340 LPGAPGVPGVEGVPGLEGDCGEDG 1363
>U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical
protein F48E3.8a protein.
Length = 2427
Score = 25.8 bits (54), Expect = 6.8
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +2
Query: 26 PTFHLETDPGQTCAP 70
P F +E +PGQTC P
Sbjct: 1833 PVFIIELNPGQTCDP 1847
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,913,818
Number of Sequences: 27780
Number of extensions: 92554
Number of successful extensions: 447
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 447
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 366105812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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