Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_F13
         (318 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    23   1.2  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    20   6.3  

>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 22.6 bits (46), Expect = 1.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 124 TLPELEGVAGVELVPGVERRAGLTGV 47
           T   ++GV GV+ V GV+   G+ GV
Sbjct: 849 TAQGVQGVQGVQGVQGVQGVQGVQGV 874



 Score = 22.2 bits (45), Expect = 1.6
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 112 LEGVAGVELVPGVERRAGLTGVCFEVEGRG 23
           ++GV GV+ V GV+   GL     +V G+G
Sbjct: 859 VQGVQGVQGVQGVQGVPGLLQGVQQVFGQG 888



 Score = 21.4 bits (43), Expect = 2.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 109 EGVAGVELVPGVERRAGLTGV 47
           +GV GV+   GV+   G+ GV
Sbjct: 842 QGVQGVQTAQGVQGVQGVQGV 862



 Score = 21.0 bits (42), Expect = 3.6
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 112 LEGVAGVELVPGVERRAGLTGV 47
           ++GV GV+ V GV+   G+ G+
Sbjct: 856 VQGVQGVQGVQGVQGVQGVPGL 877



 Score = 20.6 bits (41), Expect = 4.7
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +3

Query: 9   PGDSPPRPSTSK 44
           PG SP  PSTS+
Sbjct: 584 PGQSPDWPSTSQ 595


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 20.2 bits (40), Expect = 6.3
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -2

Query: 245 ILAGGTCALFVV 210
           ILA   C+LFVV
Sbjct: 282 ILAASACSLFVV 293


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,005
Number of Sequences: 438
Number of extensions: 1140
Number of successful extensions: 8
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6844365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)