Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_F12
         (424 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1250.05 |rpl3002|rpl30-2, rpl30|60S ribosomal protein L30|Sc...   163   8e-42
SPAC9G1.03c |rpl3001|rpl30-1, rpl30|60S ribosomal protein L30|Sc...   160   9e-41
SPAC1834.01 |sup45||translation release factor eRF1|Schizosaccha...    29   0.23 
SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces pomb...    27   1.2  
SPAC977.14c |||aldo/keto reductase, unknown biological role|Schi...    27   1.6  
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce...    25   3.7  

>SPAC1250.05 |rpl3002|rpl30-2, rpl30|60S ribosomal protein
           L30|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score =  163 bits (397), Expect = 8e-42
 Identities = 75/109 (68%), Positives = 91/109 (83%)
 Frame = +2

Query: 32  TAIIMVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIARNAPPLR 211
           TA +   +KK KK+ ++INS+LAL MKSGKY LGYK TLKTLR GKAKL++IA NAPPLR
Sbjct: 7   TAPVAAVSKKGKKSGDTINSKLALTMKSGKYVLGYKSTLKTLRSGKAKLILIAANAPPLR 66

Query: 212 KSEIEYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDII 358
           KSE+EYYA+L++  VHHYSGNNI+LGTACGK +RV  LA+ D GDSDI+
Sbjct: 67  KSELEYYAMLSRCSVHHYSGNNIDLGTACGKLFRVGVLAVIDAGDSDIL 115


>SPAC9G1.03c |rpl3001|rpl30-1, rpl30|60S ribosomal protein
           L30|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 109

 Score =  160 bits (388), Expect = 9e-41
 Identities = 73/104 (70%), Positives = 87/104 (83%)
 Frame = +2

Query: 47  VAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIARNAPPLRKSEIE 226
           V  KK KK+ ++IN++LAL MKSGKY LGYK TLKTLR GKAKL++IA N PPLRKSE+E
Sbjct: 4   VVTKKSKKSGDTINAKLALTMKSGKYVLGYKSTLKTLRSGKAKLILIAGNCPPLRKSELE 63

Query: 227 YYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDII 358
           YYA+L+K  VHHY+G NI+LGTACGK +RV  LAITD GDSDI+
Sbjct: 64  YYAMLSKANVHHYAGTNIDLGTACGKLFRVGVLAITDAGDSDIL 107


>SPAC1834.01 |sup45||translation release factor
           eRF1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 433

 Score = 29.5 bits (63), Expect = 0.23
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +2

Query: 59  KQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVI 184
           ++KK I+     ++L   SGKYC G   T+  L++G  + ++
Sbjct: 279 QEKKLIQRFFDEISL--DSGKYCFGVVDTMNALQEGAVETLL 318


>SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 910

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 14/22 (63%), Positives = 15/22 (68%)
 Frame = -1

Query: 196 IPGDDHQLSFPLSECLQSLFVA 131
           IP DD  L FPL ECL S+ VA
Sbjct: 597 IPDDDPNL-FPLFECLSSVAVA 617


>SPAC977.14c |||aldo/keto reductase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 351

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = +2

Query: 167 KAKLVIIARNAPPLRKSEIEYYALLAKTGVHHYSGNNIELGTACG 301
           ++ +VI+++   P+RK  I+ +  L+  GVH    ++ EL   CG
Sbjct: 87  RSSIVILSKCFFPVRKDLIKIFGDLSSRGVHFL--DSPELANQCG 129


>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +2

Query: 131 GYKQTLKTLRQGKAKLVIIARNAPPL 208
           G K+ +K +R+G+  LVI+A +  P+
Sbjct: 57  GVKEVVKAVRKGEKGLVILAGDISPM 82


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,685,376
Number of Sequences: 5004
Number of extensions: 33192
Number of successful extensions: 76
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)