Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_F12
(424 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1199 - 9657169-9657254,9657369-9657395,9657485-9657553,965... 171 3e-43
05_05_0300 + 23932947-23933196,23934022-23934123,23934249-239343... 168 2e-42
01_06_1103 - 34543915-34543955,34544069-34544137,34544294-345443... 163 7e-41
01_01_0981 + 7766025-7766753 31 0.29
06_01_1127 + 9294079-9294193,9294300-9294369,9294611-9294716,929... 31 0.38
08_02_1073 - 24117834-24118037,24118122-24118211,24118299-241184... 30 0.88
03_05_0830 + 28034179-28035492 29 2.0
08_01_0906 + 8933230-8933797,8933894-8934543,8937956-8938615,893... 27 6.2
09_04_0339 + 16812809-16812850,16813099-16813527 27 8.2
07_03_1085 - 23851852-23853165 27 8.2
07_02_0030 + 12002825-12003510,12003654-12003708,12003911-120039... 27 8.2
07_01_0325 + 2275922-2276013,2276467-2276500,2276810-2276932,227... 27 8.2
03_01_0010 - 94931-96034,96117-96442,97154-97283 27 8.2
>01_01_1199 -
9657169-9657254,9657369-9657395,9657485-9657553,
9657922-9658023,9659895-9660000,9660145-9660165
Length = 136
Score = 171 bits (415), Expect = 3e-43
Identities = 78/107 (72%), Positives = 91/107 (85%)
Frame = +2
Query: 44 MVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIARNAPPLRKSEI 223
MVAAKK KK+ ++IN++L LVMKSGKY LGYK L+TLR KAKLVII+ N PPLRKSEI
Sbjct: 1 MVAAKKTKKSTDNINNKLQLVMKSGKYTLGYKTVLRTLRNSKAKLVIISNNCPPLRKSEI 60
Query: 224 EYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDIITT 364
EYYA+LAK VHH+ GNN++LGTACGKY+RVC L+I DPGDSDII T
Sbjct: 61 EYYAMLAKVTVHHFHGNNVDLGTACGKYFRVCCLSIIDPGDSDIIKT 107
>05_05_0300 +
23932947-23933196,23934022-23934123,23934249-23934317,
23934406-23934446
Length = 153
Score = 168 bits (408), Expect = 2e-42
Identities = 75/108 (69%), Positives = 87/108 (80%)
Frame = +2
Query: 47 VAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIARNAPPLRKSEIE 226
V A QKK+ ++IN++L LVMKSGKY LGYK LKTLR K KL+I+A N PPLRKSEIE
Sbjct: 43 VVAMMQKKSTDNINNKLQLVMKSGKYTLGYKTVLKTLRNSKGKLIILANNCPPLRKSEIE 102
Query: 227 YYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDIITTLP 370
YYA+L K VHH+ GNN++LGTACGKYYRVC L+I DPGDSDII T P
Sbjct: 103 YYAMLGKVSVHHFHGNNVDLGTACGKYYRVCCLSIIDPGDSDIINTTP 150
>01_06_1103 -
34543915-34543955,34544069-34544137,34544294-34544395,
34545603-34545708,34545998-34546079,34546850-34547142
Length = 230
Score = 163 bits (395), Expect = 7e-41
Identities = 72/104 (69%), Positives = 84/104 (80%)
Frame = +2
Query: 65 KKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIARNAPPLRKSEIEYYALLA 244
KK E IN++L LVMKSGKY LGYK LKTLR K KLVI+A N PPLRKSEIEYYA+L
Sbjct: 126 KKNAEGINNKLQLVMKSGKYTLGYKTVLKTLRNSKGKLVIVANNCPPLRKSEIEYYAMLG 185
Query: 245 KTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDIITTLPEA 376
K V+H++GNN++LGTACGKYYRVC L++ DPGDSDI LPE+
Sbjct: 186 KVSVYHFNGNNVDLGTACGKYYRVCCLSVVDPGDSDITKQLPES 229
>01_01_0981 + 7766025-7766753
Length = 242
Score = 31.5 bits (68), Expect = 0.29
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -3
Query: 278 YCFHCSGGHLFWLGEHNILSPTSSEEA 198
+C HC H W G H+I+ P + + A
Sbjct: 40 FCSHCCSSHHLWPGHHHIVVPVTVDAA 66
>06_01_1127 +
9294079-9294193,9294300-9294369,9294611-9294716,
9295665-9295805,9296377-9296475
Length = 176
Score = 31.1 bits (67), Expect = 0.38
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 6/115 (5%)
Frame = +2
Query: 29 KTAIIMVAAKKQKKTIESINSRLALVMKSGKY-CL--GYKQTLKTLRQGKAKLVIIARNA 199
KT + + K + L LV ++ + CL G K+ +K++R+G+ L IIA N
Sbjct: 11 KTPVALAPIAKPLAGKKLCKRTLKLVRRASEAKCLKRGVKEVVKSIRRGQKGLCIIAGNI 70
Query: 200 PPLRKSEIEYYALLAKTG--VHHYSGNNIELGTA-CGKYYRVCTLAITDPGDSDI 355
P+ I + +L + + Y + +L TA K C L +T P ++
Sbjct: 71 SPI--DVITHVPILCEEANIPYVYVPSKEDLATAGTTKRPTCCVLVLTKPAKGEL 123
>08_02_1073 - 24117834-24118037,24118122-24118211,24118299-24118404,
24118477-24118648,24118737-24118839,24118927-24119181,
24119259-24119336,24119449-24119541,24119660-24119800,
24119882-24119986,24120135-24120212,24120297-24120341,
24120463-24120579,24120685-24120828,24120934-24121017,
24121139-24121232,24121322-24121447,24121585-24121658,
24121870-24122098,24123124-24123611,24123702-24123749,
24123841-24124077,24124368-24124404,24125011-24125018
Length = 1051
Score = 29.9 bits (64), Expect = 0.88
Identities = 19/59 (32%), Positives = 27/59 (45%)
Frame = +1
Query: 97 GSGYEVWQILLGLQTNFEDTQTRES*VGDHRQECASSEEVGDRILCSPSQNRCPPLQWK 273
G YE+ I LG + DT+T + GD E SSE ++ PS+ R W+
Sbjct: 993 GKIYEMMTIALGGRWGRSDTETEAATTGDASTETGSSEATVTEVI-EPSEVRPESDPWR 1050
>03_05_0830 + 28034179-28035492
Length = 437
Score = 28.7 bits (61), Expect = 2.0
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 113 SGKYCLGYKQTLKTLRQGKAKLVIIARN 196
+GKY G TLKTL G + +I+ N
Sbjct: 299 TGKYVFGVDDTLKTLEMGAVETLIVWEN 326
>08_01_0906 + 8933230-8933797,8933894-8934543,8937956-8938615,
8939751-8939817,8940421-8940724,8942993-8942996,
8944539-8946449
Length = 1387
Score = 27.1 bits (57), Expect = 6.2
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = +2
Query: 47 VAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIARNAP 202
V++ Q +ES+ + L V SG Y LG+KQ L+T +G I+ P
Sbjct: 1333 VSSSLQFSGLESMET-LKEVWLSGSYELGFKQQLETELKGNENEPILELEKP 1383
>09_04_0339 + 16812809-16812850,16813099-16813527
Length = 156
Score = 26.6 bits (56), Expect = 8.2
Identities = 26/109 (23%), Positives = 44/109 (40%), Gaps = 7/109 (6%)
Frame = +2
Query: 29 KTAIIMVAAKKQ---KKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIARNA 199
K AI++ A Q K I+ + + + L K+ + + L ++ A
Sbjct: 13 KPAIVVSAVLVQVECKAPIDKCLTEASQAINKALEALMDKRLTEASQANNKALDVVVVAA 72
Query: 200 PPLRKSEIEY----YALLAKTGVHHYSGNNIELGTACGKYYRVCTLAIT 334
PP +KSEIE+ + A + G+ +L TA Y V +T
Sbjct: 73 PPAKKSEIEHAMWKQRMFAFAALGMAEGDEKKLATASLAYKNVANAVLT 121
>07_03_1085 - 23851852-23853165
Length = 437
Score = 26.6 bits (56), Expect = 8.2
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +2
Query: 113 SGKYCLGYKQTLKTLRQGKAKLVIIARN 196
+GKY G TLK L G + +I+ N
Sbjct: 299 TGKYVFGVDDTLKALEMGAVETLIVWEN 326
>07_02_0030 +
12002825-12003510,12003654-12003708,12003911-12003996,
12004093-12004433,12004512-12004699,12004776-12004962,
12005035-12005139,12005202-12005239,12005369-12005653
Length = 656
Score = 26.6 bits (56), Expect = 8.2
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = +2
Query: 149 KTLRQGKAKLVIIARNAPPLRKSEIEYYALLAKTGVHHYSGNNIELGTACGKY 307
K RQ K +R P +RKS ++ L TG+ +G++ E G G +
Sbjct: 252 KQPRQANPKKKTSSRPMPKIRKSSRSFWKRLRPTGME--TGSSKETGPTAGNH 302
>07_01_0325 +
2275922-2276013,2276467-2276500,2276810-2276932,
2277334-2277401,2277494-2277585,2278662-2278987,
2280771-2281142
Length = 368
Score = 26.6 bits (56), Expect = 8.2
Identities = 12/46 (26%), Positives = 24/46 (52%)
Frame = +2
Query: 32 TAIIMVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGK 169
+A+++V K K ++S L L++ GYK+ ++QG+
Sbjct: 40 SALVLVLTKSDKPALDSCLDNLGLLLTKFLDLQGYKRLESLVKQGE 85
>03_01_0010 - 94931-96034,96117-96442,97154-97283
Length = 519
Score = 26.6 bits (56), Expect = 8.2
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -2
Query: 213 FLRGGAFLAMITNLAFPCLSVFKVCL 136
FL G FLAM+ +L F +F CL
Sbjct: 437 FLIGQTFLAMLCHLKFATFFLFAACL 462
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,297,432
Number of Sequences: 37544
Number of extensions: 228937
Number of successful extensions: 599
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 778540620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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