Samia BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_F12
         (424 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705399-1|AAU12508.1|  533|Anopheles gambiae nicotinic acetylch...    25   1.5  
AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcript...    23   6.0  
AF492464-1|AAM11657.1|  803|Anopheles gambiae beta nu integrin s...    22   8.0  

>AY705399-1|AAU12508.1|  533|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 5 protein.
          Length = 533

 Score = 24.6 bits (51), Expect = 1.5
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 75  MVFFCFFAATIMIAVFYSDPH 13
           ++ F FF     IAV +S PH
Sbjct: 509 LIIFTFFTIVATIAVLFSAPH 529


>AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1173

 Score = 22.6 bits (46), Expect = 6.0
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 286 RYCLRKILQSMYSSNHRPWRF*HHNNIA*GNSLDL 390
           RY   ++L+S + S+HR  RF   ++   GN + L
Sbjct: 183 RYNTWEVLKSYWYSDHRYVRFSVDSSSVLGNGIQL 217


>AF492464-1|AAM11657.1|  803|Anopheles gambiae beta nu integrin
           subunit AgBnu protein.
          Length = 803

 Score = 22.2 bits (45), Expect = 8.0
 Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = +2

Query: 56  KKQKKTIESINSRLALVMK--SGKYCLGY 136
           +  K T+ES+ S+LAL +   +  Y LG+
Sbjct: 152 RDDKATLESMGSQLALALANLTANYQLGF 180


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 439,491
Number of Sequences: 2352
Number of extensions: 8671
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 563,979
effective HSP length: 58
effective length of database: 427,563
effective search space used: 35060166
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)