Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_F11
(531 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P46781 Cluster: 40S ribosomal protein S9; n=181; Eukary... 267 1e-70
UniRef50_O15612 Cluster: 40S ribosomal protein S9; n=2; Entamoeb... 153 2e-36
UniRef50_Q10KL6 Cluster: 40S ribosomal protein S9, putative; n=5... 128 8e-29
UniRef50_Q3LWD1 Cluster: Ribosomal protein S9; n=1; Bigelowiella... 116 3e-25
UniRef50_Q8SRW6 Cluster: 40S RIBOSOMAL PROTEIN S9; n=1; Encephal... 109 3e-23
UniRef50_A7IAH7 Cluster: Ribosomal protein S4; n=1; Candidatus M... 109 3e-23
UniRef50_Q2FT97 Cluster: 30S ribosomal protein S4P; n=2; Methano... 107 1e-22
UniRef50_P54020 Cluster: 30S ribosomal protein S4P; n=12; Archae... 102 4e-21
UniRef50_UPI0000501C59 Cluster: UPI0000501C59 related cluster; n... 100 2e-20
UniRef50_Q6CM19 Cluster: Similarity; n=2; Saccharomycetaceae|Rep... 98 1e-19
UniRef50_Q97B95 Cluster: 30S ribosomal protein S4P; n=5; Archaea... 97 3e-19
UniRef50_Q8ZTV1 Cluster: 30S ribosomal protein S4P; n=5; Thermop... 96 5e-19
UniRef50_Q8PV18 Cluster: 30S ribosomal protein S4P; n=8; Euryarc... 94 2e-18
UniRef50_A6UW05 Cluster: Ribosomal protein S4; n=1; Methanococcu... 91 1e-17
UniRef50_Q0W1V5 Cluster: 30S ribosomal protein S4P; n=1; uncultu... 91 1e-17
UniRef50_Q96YV8 Cluster: 30S ribosomal protein S4P; n=2; Sulfolo... 91 1e-17
UniRef50_Q74NF7 Cluster: 30S ribosomal protein S4P; n=5; Archaea... 89 6e-17
UniRef50_Q2NFZ4 Cluster: 30S ribosomal protein S4P; n=3; Methano... 85 1e-15
UniRef50_Q9HQJ6 Cluster: 30S ribosomal protein S4P; n=3; Halobac... 83 4e-15
UniRef50_A0RY02 Cluster: 30S ribosomal protein S4P; n=3; Thermop... 77 3e-13
UniRef50_A0SNY6 Cluster: Ribosomal protein small subunit S9; n=1... 69 5e-11
UniRef50_A6MWA4 Cluster: Ribosomal subunit protein S9; n=3; Euth... 60 4e-08
UniRef50_Q9SZ81 Cluster: Putative ribosomal protein; n=1; Arabid... 52 6e-06
UniRef50_Q011L4 Cluster: Chromosome 09 contig 1, DNA sequence; n... 50 3e-05
UniRef50_Q82T00 Cluster: 30S ribosomal protein S4 B; n=3; Betapr... 48 2e-04
UniRef50_A5BYX8 Cluster: Putative uncharacterized protein; n=1; ... 47 2e-04
UniRef50_O21263 Cluster: Mitochondrial ribosomal protein S4; n=1... 46 4e-04
UniRef50_Q8RE43 Cluster: 30S ribosomal protein S4; n=6; Bacteria... 46 4e-04
UniRef50_Q9NV31 Cluster: U3 small nucleolar ribonucleoprotein pr... 46 5e-04
UniRef50_Q4AEQ5 Cluster: Ribosomal protein S4:RNA-binding S4; n=... 46 7e-04
UniRef50_Q8SRU8 Cluster: U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN; n... 46 7e-04
UniRef50_P48270 Cluster: Chloroplast 30S ribosomal protein S4; n... 45 0.001
UniRef50_A5KQD5 Cluster: Putative uncharacterized protein; n=2; ... 44 0.002
UniRef50_P59129 Cluster: 30S ribosomal protein S4; n=19; Bacteri... 44 0.002
UniRef50_Q6AP44 Cluster: 30S ribosomal protein S4; n=37; Bacteri... 44 0.003
UniRef50_O66484 Cluster: 30S ribosomal protein S4; n=17; Bacteri... 42 0.007
UniRef50_Q0D4G1 Cluster: Os07g0628300 protein; n=2; Oryza sativa... 42 0.009
UniRef50_Q17AL1 Cluster: U3 small nucleolar ribonucleoprotein pr... 42 0.012
UniRef50_Q0TMU2 Cluster: 30S ribosomal protein S4 B; n=13; Clost... 42 0.012
UniRef50_Q6MIP0 Cluster: 30S ribosomal protein S4 B; n=1; Bdello... 42 0.012
UniRef50_P58134 Cluster: Plastid 30S ribosomal protein S4; n=2; ... 42 0.012
UniRef50_A6DLN6 Cluster: 30S ribosomal protein S4; n=1; Lentisph... 41 0.021
UniRef50_Q5YGE8 Cluster: Small ribosomal protein 4; n=1; Calycul... 41 0.021
UniRef50_A5USG3 Cluster: Ribosomal protein S4; n=4; Chloroflexac... 40 0.027
UniRef50_Q5DQ32 Cluster: Ribosomal protein small subunit 4; n=6;... 40 0.027
UniRef50_A7AVJ4 Cluster: U3 small nucleolar ribonucleoprotein pr... 40 0.027
UniRef50_Q74K05 Cluster: 30S ribosomal protein S4; n=107; cellul... 40 0.036
UniRef50_A3HXD0 Cluster: 30S ribosomal protein S4; n=1; Algoriph... 40 0.047
UniRef50_O01513 Cluster: Putative 40S ribosomal protein S4-like;... 40 0.047
UniRef50_Q2JUD6 Cluster: 30S ribosomal protein S4; n=2041; cellu... 40 0.047
UniRef50_Q7YLR6 Cluster: Small ribosomal protein 4; n=10; Conife... 39 0.063
UniRef50_A7QX06 Cluster: Chromosome chr14 scaffold_211, whole ge... 39 0.063
UniRef50_Q9G884 Cluster: Ribosomal protein S4; n=1; Malawimonas ... 39 0.063
UniRef50_Q1CXF1 Cluster: 30S ribosomal protein S4 B; n=2; Cystob... 39 0.063
UniRef50_P32899 Cluster: U3 small nucleolar ribonucleoprotein pr... 39 0.083
UniRef50_Q7R0S4 Cluster: GLP_186_71509_70955; n=1; Giardia lambl... 38 0.11
UniRef50_P56799 Cluster: Chloroplast 30S ribosomal protein S4; n... 38 0.14
UniRef50_Q2GDI3 Cluster: 30S ribosomal protein S4; n=8; Ricketts... 37 0.25
UniRef50_A0JX91 Cluster: 30S ribosomal protein S4; n=20; Actinob... 37 0.25
UniRef50_Q9XQQ7 Cluster: Apicoplast 30S ribosomal protein S4; n=... 37 0.25
UniRef50_Q06J34 Cluster: Chloroplast 30S ribosomal protein S4; n... 37 0.25
UniRef50_Q9X1I3 Cluster: 30S ribosomal protein S4; n=14; Bacteri... 36 0.44
UniRef50_O51560 Cluster: 30S ribosomal protein S4; n=3; Borrelia... 36 0.44
UniRef50_Q9XPI8 Cluster: Ribosomal protein S4; n=2; Dictyosteliu... 36 0.77
UniRef50_Q5LNM2 Cluster: 30S ribosomal protein S4; n=86; Bacteri... 36 0.77
UniRef50_Q92BB2 Cluster: 30S ribosomal protein S4; n=35; Bacteri... 36 0.77
UniRef50_Q54XG2 Cluster: Putative uncharacterized protein; n=1; ... 35 1.0
UniRef50_Q2JFE9 Cluster: 30S ribosomal protein S4; n=25; Bacteri... 35 1.0
UniRef50_A2E3D0 Cluster: S4 domain containing protein; n=1; Tric... 34 1.8
UniRef50_Q2UJB9 Cluster: Predicted protein; n=1; Aspergillus ory... 34 1.8
UniRef50_Q8IKM0 Cluster: Ribosomal protein S4, putative; n=1; Pl... 34 2.4
UniRef50_Q4P328 Cluster: Helicase SWR1; n=1; Ustilago maydis|Rep... 33 3.1
UniRef50_P46743 Cluster: Mitochondrial ribosomal protein S4; n=1... 33 3.1
UniRef50_Q9Z5U7 Cluster: 30S ribosomal protein S4; n=5; Alphapro... 33 3.1
UniRef50_UPI0000498936 Cluster: U3 small nucleolar ribonucleopro... 33 4.1
UniRef50_UPI0000084740 Cluster: lethal (2) 35Bb CG31834-PA; n=1;... 33 4.1
UniRef50_Q7YN81 Cluster: Apicoplast 30S ribosomal protein S4; n=... 33 4.1
UniRef50_A4IW51 Cluster: NAD dependent epimerase/dehydratase fam... 32 7.2
UniRef50_Q5KLM6 Cluster: Nam9 protein, mitochondrial, putative; ... 32 7.2
UniRef50_A0B7K6 Cluster: Thiamine biosynthesis protein; n=1; Met... 32 7.2
UniRef50_UPI0000E4A709 Cluster: PREDICTED: similar to EGF-like p... 32 9.5
UniRef50_UPI0000E4A461 Cluster: PREDICTED: similar to MGC69249 p... 32 9.5
UniRef50_A3X9S8 Cluster: Sensor protein; n=2; Roseobacter|Rep: S... 32 9.5
UniRef50_A1VAB9 Cluster: DegT/DnrJ/EryC1/StrS aminotransferase; ... 32 9.5
>UniRef50_P46781 Cluster: 40S ribosomal protein S9; n=181;
Eukaryota|Rep: 40S ribosomal protein S9 - Homo sapiens
(Human)
Length = 194
Score = 267 bits (654), Expect = 1e-70
Identities = 129/156 (82%), Positives = 139/156 (89%)
Frame = +1
Query: 64 VFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKD 243
V KTYVTPRRPFEK+RLDQELK+IGEYGLRNKREVWRVK+TLA+IRKAARELLTL+EKD
Sbjct: 8 VCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKD 67
Query: 244 PKRLFEGNAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFNAGLAKSIHHAR 423
P+RLFEGNA DE +MKLDY+LGLKIEDFLERRLQTQVF GLAKSIHHAR
Sbjct: 68 PRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHAR 127
Query: 424 ILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKS 531
+LIRQRHIRVRKQVVNIPSFIVRLDS KHIDFSL+S
Sbjct: 128 VLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRS 163
>UniRef50_O15612 Cluster: 40S ribosomal protein S9; n=2; Entamoeba
histolytica|Rep: 40S ribosomal protein S9 - Entamoeba
histolytica
Length = 185
Score = 153 bits (372), Expect = 2e-36
Identities = 74/144 (51%), Positives = 100/144 (69%)
Frame = +1
Query: 70 SKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPK 249
S TY TP+ P+E+ R D ELK++G++GL+NK+E+ RV Y L +R A+ +L + KDPK
Sbjct: 9 SITYKTPKVPYERERFDAELKLVGQFGLKNKKEIQRVHYMLGHMRTIAKVMLMKDAKDPK 68
Query: 250 RLFEGNAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFNAGLAKSIHHARIL 429
RL EG A Q KL++VL LK E+ LERRLQT V+ G AKSIHHAR+L
Sbjct: 69 RLLEGAALLRRLHNLGILPRDQNKLEFVLALKEENLLERRLQTLVYRKGFAKSIHHARVL 128
Query: 430 IRQRHIRVRKQVVNIPSFIVRLDS 501
IR + I+V KQVV++PSF+VR++S
Sbjct: 129 IRGKMIKVGKQVVDVPSFLVRVES 152
>UniRef50_Q10KL6 Cluster: 40S ribosomal protein S9, putative; n=5;
Oryza sativa|Rep: 40S ribosomal protein S9, putative -
Oryza sativa subsp. japonica (Rice)
Length = 157
Score = 128 bits (309), Expect = 8e-29
Identities = 67/127 (52%), Positives = 82/127 (64%)
Frame = +1
Query: 67 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 246
+ KT+ PRRP+EK R D ELK+ GEYGLR+K E+WRV+ ELLTL+EK+P
Sbjct: 10 YGKTFKKPRRPYEKERPDAELKLYGEYGLRSKCELWRVQ-----------ELLTLDEKNP 58
Query: 247 KRLFEGNAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFNAGLAKSIHHARI 426
+R+FEG A E Q KLDYVL L +E+FL+ RLQT VF G KSIHH +
Sbjct: 59 RRIFEGEALLRHMNRYGLLGEGQNKLDYVLALTVENFLQCRLQTIVFKNGTVKSIHHDHV 118
Query: 427 LIRQRHI 447
LIRQ HI
Sbjct: 119 LIRQHHI 125
>UniRef50_Q3LWD1 Cluster: Ribosomal protein S9; n=1; Bigelowiella
natans|Rep: Ribosomal protein S9 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 180
Score = 116 bits (279), Expect = 3e-25
Identities = 59/155 (38%), Positives = 92/155 (59%)
Frame = +1
Query: 67 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 246
+SK + P+ P+EK RL E+++I +GL+NKRE+WR ++ L+++RK A +L+ + K
Sbjct: 10 YSKIWNRPKNPYEKLRLCNEIRMINLFGLKNKRELWRTQFFLSKLRKVAEKLIYKKAKLE 69
Query: 247 KRLFEGNAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFNAGLAKSIHHARI 426
K + + L+ ++ + + L RRLQT V L+K+IH ARI
Sbjct: 70 KIPSQSYGILWFCYKYNFMNNMTFCLESIIKIDLRSILSRRLQTVVKQLKLSKTIHEARI 129
Query: 427 LIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKS 531
LI +HI+V+ Q+VN PSF+VR D+ I FSL S
Sbjct: 130 LIMHKHIQVKNQIVNKPSFLVRKDNEIFISFSLNS 164
>UniRef50_Q8SRW6 Cluster: 40S RIBOSOMAL PROTEIN S9; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S9 -
Encephalitozoon cuniculi
Length = 184
Score = 109 bits (263), Expect = 3e-23
Identities = 63/158 (39%), Positives = 94/158 (59%), Gaps = 7/158 (4%)
Frame = +1
Query: 70 SKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP- 246
SK TPR PFEK RL +E +++G YGL+NK E+W ++ A+ ++ AR LLT +
Sbjct: 7 SKRASTPRDPFEKERLIREAQLVGVYGLKNKHELWVMEKIFAKDKERARILLTSTNPEDI 66
Query: 247 ----KRLFEGNAXXXXXXXXXXXDEKQMK--LDYVLGLKIEDFLERRLQTQVFNAGLAKS 408
+ L D++++ L+ VL L I +LERRLQ +VF AGLAKS
Sbjct: 67 PINGRSLLRRLMKYGILGGIDLCDKQEVVNGLNKVLDLTINHYLERRLQFRVFAAGLAKS 126
Query: 409 IHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFS 522
+HHAR+LI R I ++ Q+V++P F+VR D I+++
Sbjct: 127 VHHARLLIGGRCISIKDQIVDVPGFMVRADKEPLIEYN 164
>UniRef50_A7IAH7 Cluster: Ribosomal protein S4; n=1; Candidatus
Methanoregula boonei 6A8|Rep: Ribosomal protein S4 -
Methanoregula boonei (strain 6A8)
Length = 185
Score = 109 bits (263), Expect = 3e-23
Identities = 63/160 (39%), Positives = 89/160 (55%), Gaps = 2/160 (1%)
Frame = +1
Query: 58 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTL-E 234
P K+Y TP+RPFEK R+++E +++ EYGLRNKREVW+ + L + RKAARELL L
Sbjct: 4 PGKNHKSYQTPKRPFEKTRIEEETRLVIEYGLRNKREVWKAQSHLRKYRKAARELLALMS 63
Query: 235 EKDPKRLFEG-NAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFNAGLAKSI 411
+ +FE + +D VL LK+ LERRLQT V+ GLA+S
Sbjct: 64 SATNQTVFEAKKSELISHMQRAGLLGPDADIDNVLALKVPAQLERRLQTLVYRKGLARSP 123
Query: 412 HHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKS 531
AR L+ HI + + V +P ++V I ++ KS
Sbjct: 124 KQARQLVTHGHIAIGGRRVTVPGYLVTRGEETTISYAGKS 163
>UniRef50_Q2FT97 Cluster: 30S ribosomal protein S4P; n=2;
Methanomicrobiales|Rep: 30S ribosomal protein S4P -
Methanospirillum hungatei (strain JF-1 / DSM 864)
Length = 181
Score = 107 bits (258), Expect = 1e-22
Identities = 59/157 (37%), Positives = 85/157 (54%), Gaps = 2/157 (1%)
Frame = +1
Query: 58 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 237
P K Y TP+RPFE +R+++E +++ EYGLRNKREVW K L + RKAARE++ L+
Sbjct: 4 PGKNHKQYQTPKRPFELSRIEEETRLVIEYGLRNKREVWIAKGALRKYRKAAREIIALQS 63
Query: 238 --KDPKRLFEGNAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFNAGLAKSI 411
+ R+ + +D VL LK+E L+RRLQTQV+ G A+S
Sbjct: 64 TGSEQARVERKKDELIGSLQRSGMLSENADIDDVLALKVEQQLDRRLQTQVYRRGFARSP 123
Query: 412 HHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFS 522
AR I HI + + V IP + V + I ++
Sbjct: 124 KQARQFITHGHIAIGGRRVTIPGYTVSAKEQEEISYA 160
>UniRef50_P54020 Cluster: 30S ribosomal protein S4P; n=12;
Archaea|Rep: 30S ribosomal protein S4P - Methanococcus
jannaschii
Length = 187
Score = 102 bits (245), Expect = 4e-21
Identities = 58/155 (37%), Positives = 85/155 (54%)
Frame = +1
Query: 67 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 246
F KTY TP P+ K R+++E ++ +YGLR KREVW+ + L + R+ AR L++ ++
Sbjct: 8 FKKTYETPNHPWIKERIEREKELCRKYGLRRKREVWKAETILRKYRRQARRLIS--DRTE 65
Query: 247 KRLFEGNAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFNAGLAKSIHHARI 426
+ E + LD VL L +ED LERRLQT VF GLA++ AR
Sbjct: 66 QGAKEAVQLFNVLKKYGILKIENPTLDDVLSLTVEDILERRLQTLVFRKGLARTPRQARQ 125
Query: 427 LIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKS 531
LI HI V +VV PS++V ++ I ++ S
Sbjct: 126 LIVHGHIAVNGRVVTAPSYMVTVEEEDKISYAKNS 160
>UniRef50_UPI0000501C59 Cluster: UPI0000501C59 related cluster; n=1;
Rattus norvegicus|Rep: UPI0000501C59 UniRef100 entry -
Rattus norvegicus
Length = 199
Score = 100 bits (239), Expect = 2e-20
Identities = 62/125 (49%), Positives = 74/125 (59%), Gaps = 7/125 (5%)
Frame = +1
Query: 166 EVWRVKYTLARIRKAARELLTL-EEKDPKRLFEGNAXXXXXXXXXXXDEKQMK------L 324
EVWRVK+TL +IRKA ELL L EKDP+ LFE N E +MK
Sbjct: 41 EVWRVKFTLTKIRKAFWELLLLLNEKDPRYLFEDNLLLRQLVHTGLLGEGKMKPRRSWFT 100
Query: 325 DYVLGLKIEDFLERRLQTQVFNAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSG 504
+ GL+I F E++LQTQVF L KSI HA +L+ HIR+ KQVV+I F V LDS
Sbjct: 101 SWAFGLRIY-FSEKQLQTQVFELVLDKSIRHACVLLCHCHIRIGKQVVDIAFFFVGLDSR 159
Query: 505 KHIDF 519
KH DF
Sbjct: 160 KHTDF 164
>UniRef50_Q6CM19 Cluster: Similarity; n=2; Saccharomycetaceae|Rep:
Similarity - Kluyveromyces lactis (Yeast) (Candida
sphaerica)
Length = 246
Score = 97.9 bits (233), Expect = 1e-19
Identities = 54/154 (35%), Positives = 93/154 (60%)
Frame = -1
Query: 519 EVNVLAGVQADDERRNVHHLLADTNMPLSDQDAGMMD*LRKTSIEHLSLKTALQEVLNLQ 340
EVNVL Q+D ER +V LL ++N+ L DQD+ +++ L +T + L L+++ QE+ NLQ
Sbjct: 34 EVNVLLRFQSDHERWDVDDLLTNSNVSLGDQDSSVVNRLGQTQLVDLGLQSSFQEIFNLQ 93
Query: 339 TEHIIQFHLFLIKHSDPNQTT**SIAFKQSLRILLLECQQFTGSLTDASERVLDAPHFTL 160
++ IIQ L + ++ +Q++ SI F+QSL +L + QQ +G +D + ++ +F+L
Sbjct: 94 SQDIIQLLLVFRQDTNSHQSSDQSITFEQSLWVLFVSGQQISGGSSDLRQLERNSVNFSL 153
Query: 159 VAETILSDDLQLLIKTRLLERTSRSYVCFGKYRW 58
V +T+ + LQ ++T R+ S V G W
Sbjct: 154 VLQTVFTSQLQFGVQTSGFVRSLWSRVSLGVSSW 187
>UniRef50_Q97B95 Cluster: 30S ribosomal protein S4P; n=5;
Archaea|Rep: 30S ribosomal protein S4P - Thermoplasma
volcanium
Length = 200
Score = 96.7 bits (230), Expect = 3e-19
Identities = 59/145 (40%), Positives = 76/145 (52%), Gaps = 1/145 (0%)
Frame = +1
Query: 58 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAAREL-LTLE 234
P K Y TPR P+EK R+D+E KI+ +YGL+NKRE+WR + L+ IR AR L L
Sbjct: 4 PKFHHKKYSTPRHPWEKDRIDEENKILVKYGLKNKREIWRSEAMLSSIRSQARYLRARLR 63
Query: 235 EKDPKRLFEGNAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFNAGLAKSIH 414
D + +K LD VL L +E+ L+RRLQT VF LA S
Sbjct: 64 ASDANAQKQLERMIKRLSRYKILSDK-ATLDDVLSLTVENILDRRLQTIVFKKNLALSEK 122
Query: 415 HARILIRQRHIRVRKQVVNIPSFIV 489
AR LI HI V + V +P +V
Sbjct: 123 QARQLITHGHITVNGRRVTVPGMLV 147
>UniRef50_Q8ZTV1 Cluster: 30S ribosomal protein S4P; n=5;
Thermoproteaceae|Rep: 30S ribosomal protein S4P -
Pyrobaculum aerophilum
Length = 159
Score = 95.9 bits (228), Expect = 5e-19
Identities = 55/136 (40%), Positives = 78/136 (57%), Gaps = 2/136 (1%)
Frame = +1
Query: 88 PRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELL--TLEEKDPKRLFE 261
P++ + K L +EL+++GEYGLRNK+E+W + L I + AR LL T EE+ P +
Sbjct: 16 PKKIWNKQLLLEELQLMGEYGLRNKKELWLARARLKWITRRARSLLSMTAEERAPLEM-- 73
Query: 262 GNAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFNAGLAKSIHHARILIRQR 441
++ ++LD +L L + LERRLQT V+ GLAKSIHHAR LI
Sbjct: 74 --PFKEKLYKMGFIEDPNVQLDRILSLDVRAILERRLQTIVYRMGLAKSIHHARQLIVHG 131
Query: 442 HIRVRKQVVNIPSFIV 489
H+ V + V P F+V
Sbjct: 132 HVAVAGRRVTSPGFLV 147
>UniRef50_Q8PV18 Cluster: 30S ribosomal protein S4P; n=8;
Euryarchaeota|Rep: 30S ribosomal protein S4P -
Methanosarcina mazei (Methanosarcina frisia)
Length = 219
Score = 94.3 bits (224), Expect = 2e-18
Identities = 55/160 (34%), Positives = 82/160 (51%), Gaps = 6/160 (3%)
Frame = +1
Query: 58 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLT-LE 234
P SK+Y TPR P+++AR+ E++++ YGLRNK+EVW+ L R AR+LL +
Sbjct: 4 PGKKSKSYETPRHPWQEARMAAEVQLVKAYGLRNKKEVWKAASMLRMYRSEARKLLAQVA 63
Query: 235 EKDPKRLFEGN-----AXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFNAGL 399
+ EG+ + +D +L LK E+ LERRLQTQV GL
Sbjct: 64 SGGQEGELEGHYATQSEEILSKLIRYGIIKADANVDDILSLKTENILERRLQTQVLRLGL 123
Query: 400 AKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDF 519
A+++ AR I HI + + IP +V + HI +
Sbjct: 124 ARTVIQARQFITHGHIAINGRKATIPGMLVSKEDEMHIGY 163
>UniRef50_A6UW05 Cluster: Ribosomal protein S4; n=1; Methanococcus
aeolicus Nankai-3|Rep: Ribosomal protein S4 -
Methanococcus aeolicus Nankai-3
Length = 177
Score = 91.5 bits (217), Expect = 1e-17
Identities = 53/146 (36%), Positives = 77/146 (52%)
Frame = +1
Query: 58 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 237
P SKTY TP P+ R+ QE ++ +YGL NK+E+W+++ L R+ AR+L++
Sbjct: 4 PRRLSKTYDTPNHPWIGERIKQERELSNKYGLSNKKEIWKMETRLRTFRRQARKLISDTS 63
Query: 238 KDPKRLFEGNAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFNAGLAKSIHH 417
++ E ++ LD VL L +E LERRLQT VF GLA +
Sbjct: 64 AQGEK--EAVQLFGILNRYGILLKEDATLDDVLSLNLESILERRLQTLVFRKGLANTPKQ 121
Query: 418 ARILIRQRHIRVRKQVVNIPSFIVRL 495
AR I HI V + +N PS++V L
Sbjct: 122 ARQFIVHGHIAVNGKKINAPSYLVPL 147
>UniRef50_Q0W1V5 Cluster: 30S ribosomal protein S4P; n=1; uncultured
methanogenic archaeon RC-I|Rep: 30S ribosomal protein
S4P - Uncultured methanogenic archaeon RC-I
Length = 205
Score = 91.1 bits (216), Expect = 1e-17
Identities = 49/148 (33%), Positives = 75/148 (50%), Gaps = 4/148 (2%)
Frame = +1
Query: 58 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 237
P K Y TP P++KAR+D+E ++ +YGLRNK+ VW+ L + R AR LL +
Sbjct: 4 PGQAKKLYDTPNHPWQKARIDEETSLVKKYGLRNKKSVWKHASDLRKYRSNARALLGVMS 63
Query: 238 ----KDPKRLFEGNAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFNAGLAK 405
+ ++ KL+ VL LK++D +ERRLQT ++ G A
Sbjct: 64 AGNLPEDSHYIRDAQNIVKKLQTLGILKEDAKLEDVLALKVDDIMERRLQTIIYRKGFAN 123
Query: 406 SIHHARILIRQRHIRVRKQVVNIPSFIV 489
SI AR I HI + + + +P ++V
Sbjct: 124 SIKQARQFIVHGHISLNGRKITVPGYLV 151
>UniRef50_Q96YV8 Cluster: 30S ribosomal protein S4P; n=2;
Sulfolobaceae|Rep: 30S ribosomal protein S4P -
Sulfolobus tokodaii
Length = 177
Score = 91.1 bits (216), Expect = 1e-17
Identities = 54/154 (35%), Positives = 79/154 (51%)
Frame = +1
Query: 58 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 237
P + + P P+ + L++E +IG+YGLRNKRE+W + + + R AR LL L
Sbjct: 4 PKKSRRKWEGPGHPWIRINLEKEQVLIGKYGLRNKRELWLAQTIIRKFRHQARSLLALPP 63
Query: 238 KDPKRLFEGNAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFNAGLAKSIHH 417
+ R ++ LD +LGL E++LERRLQT V+ GLA++I+
Sbjct: 64 AE--RSTREKQLIQKLYRMGIIEKDNATLDDILGLNEENYLERRLQTIVYKKGLARTIYQ 121
Query: 418 ARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDF 519
AR LI HI + + V P +IV IDF
Sbjct: 122 ARQLIVHGHIAIGGRRVTSPGYIVMRGEEDLIDF 155
>UniRef50_Q74NF7 Cluster: 30S ribosomal protein S4P; n=5;
Archaea|Rep: 30S ribosomal protein S4P - Nanoarchaeum
equitans
Length = 180
Score = 89.0 bits (211), Expect = 6e-17
Identities = 51/144 (35%), Positives = 79/144 (54%)
Frame = +1
Query: 88 PRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGN 267
P P++K RL E +++ EYGL+NKRE+W + T+AR +A L ++ + + E
Sbjct: 11 PSHPWQKQRLIIEKRLMKEYGLKNKRELW-IAETIARKWRAYARYLNAKQAAGQDISEEK 69
Query: 268 AXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFNAGLAKSIHHARILIRQRHI 447
+ +LD VL L ++D LERRLQT + GLAK++ AR I HI
Sbjct: 70 ERFLTKLKKLGVLSENAELDDVLDLTVKDVLERRLQTMLVRKGLAKTMKQARQFIVHGHI 129
Query: 448 RVRKQVVNIPSFIVRLDSGKHIDF 519
V +VV+ PS++V+ + I+F
Sbjct: 130 MVNGEVVDAPSYLVKKEEEDKIEF 153
>UniRef50_Q2NFZ4 Cluster: 30S ribosomal protein S4P; n=3;
Methanobacteriaceae|Rep: 30S ribosomal protein S4P -
Methanosphaera stadtmanae (strain DSM 3091)
Length = 182
Score = 84.6 bits (200), Expect = 1e-15
Identities = 46/149 (30%), Positives = 75/149 (50%)
Frame = +1
Query: 73 KTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKR 252
K Y TP P+ R+ +E ++ +YGL+NK+E+W+ + + R R+ AR +L + D
Sbjct: 9 KQYDTPSHPWNADRIKEENRLANKYGLKNKKEIWKAESRVKRYRRDARIILGM---DIDE 65
Query: 253 LFEGNAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFNAGLAKSIHHARILI 432
+ KL+ VL L +ED L RRLQ+ VF GL+ + AR+ +
Sbjct: 66 RADKEKELLDHLVRAGFISPNAKLEEVLDLNVEDILRRRLQSLVFKRGLSHTAKEARLFV 125
Query: 433 RQRHIRVRKQVVNIPSFIVRLDSGKHIDF 519
HI + + +N P +V ++IDF
Sbjct: 126 VHGHITLNGKKINAPGHLVEKADEENIDF 154
>UniRef50_Q9HQJ6 Cluster: 30S ribosomal protein S4P; n=3;
Halobacteriaceae|Rep: 30S ribosomal protein S4P -
Halobacterium salinarium (Halobacterium halobium)
Length = 170
Score = 83.0 bits (196), Expect = 4e-15
Identities = 50/155 (32%), Positives = 75/155 (48%)
Frame = +1
Query: 55 VPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLE 234
+P +K Y TP P++ R+ +E ++ YGL+NK E+WR + L R+ AR LL
Sbjct: 3 LPGENTKFYETPNHPYQGERIAEESDLLSRYGLKNKEELWRAQSELRDYRREARRLL--- 59
Query: 235 EKDPKRLFEGNAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFNAGLAKSIH 414
G E++ +LD VL L++ D LERRLQT V+ GLA ++
Sbjct: 60 --GQTGTVSGEEFVARLQRIGILSEEE-RLDDVLSLEVTDVLERRLQTVVYREGLANTMG 116
Query: 415 HARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDF 519
AR + H+ V V PS+ V + + F
Sbjct: 117 QARQFVSHGHVTVDGSRVTEPSYTVPVSEENTLAF 151
>UniRef50_A0RY02 Cluster: 30S ribosomal protein S4P; n=3;
Thermoprotei|Rep: 30S ribosomal protein S4P -
Cenarchaeum symbiosum
Length = 205
Score = 77.0 bits (181), Expect = 3e-13
Identities = 48/147 (32%), Positives = 73/147 (49%)
Frame = +1
Query: 58 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 237
P + + + P+RPF +EL+ +G +GLR KRE+W+ L+R+R AR LL L +
Sbjct: 4 PKLPRRMWRKPKRPFNYDLKMEELRTLGTFGLRTKRELWKAHTELSRVRNQARSLLALGQ 63
Query: 238 KDPKRLFEGNAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFNAGLAKSIHH 417
+ +R K LD VL L++ D L RRLQT V + +
Sbjct: 64 EVRER---KEPVLLRSLARIGLVGKDASLDDVLNLQVNDLLGRRLQTIVMKKLGFSTPYQ 120
Query: 418 ARILIRQRHIRVRKQVVNIPSFIVRLD 498
AR + HI + +VV IPS+ V ++
Sbjct: 121 ARQAVVHGHITISDRVVTIPSYTVYVE 147
>UniRef50_A0SNY6 Cluster: Ribosomal protein small subunit S9; n=1;
uncultured euryarchaeote ARMAN-2|Rep: Ribosomal protein
small subunit S9 - uncultured euryarchaeote ARMAN-2
Length = 187
Score = 69.3 bits (162), Expect = 5e-11
Identities = 46/139 (33%), Positives = 69/139 (49%)
Frame = +1
Query: 73 KTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKR 252
+ Y P+ + AR+ + +I EYGL N E+W+V+ ++R+R R LL+
Sbjct: 9 RKYDKPKDIWNLARIKADNALIAEYGLANMHELWKVQSEISRLRGNVRVLLSGSSSH--- 65
Query: 253 LFEGNAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFNAGLAKSIHHARILI 432
+ + E L+ VL + FLERRLQT VF GLA++I AR LI
Sbjct: 66 --DTSDKIIARMVKFGILENGATLEKVLDITPNAFLERRLQTVVFKKGLARTIKQARQLI 123
Query: 433 RQRHIRVRKQVVNIPSFIV 489
I V + V+IP ++V
Sbjct: 124 THGFIAVNMKRVSIPGYMV 142
>UniRef50_A6MWA4 Cluster: Ribosomal subunit protein S9; n=3;
Eutheria|Rep: Ribosomal subunit protein S9 - Trichechus
manatus latirostris
Length = 30
Score = 59.7 bits (138), Expect = 4e-08
Identities = 26/30 (86%), Positives = 30/30 (100%)
Frame = +1
Query: 169 VWRVKYTLARIRKAARELLTLEEKDPKRLF 258
VWRVK+TLA+IRKAARELLTL+EKDP+RLF
Sbjct: 1 VWRVKFTLAKIRKAARELLTLDEKDPRRLF 30
>UniRef50_Q9SZ81 Cluster: Putative ribosomal protein; n=1;
Arabidopsis thaliana|Rep: Putative ribosomal protein -
Arabidopsis thaliana (Mouse-ear cress)
Length = 106
Score = 52.4 bits (120), Expect = 6e-06
Identities = 24/36 (66%), Positives = 30/36 (83%)
Frame = +1
Query: 304 DEKQMKLDYVLGLKIEDFLERRLQTQVFNAGLAKSI 411
D ++ KLDYVL L +E+FLERRLQT VF +G+AKSI
Sbjct: 17 DSEKNKLDYVLALTVENFLERRLQTIVFKSGMAKSI 52
>UniRef50_Q011L4 Cluster: Chromosome 09 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 09 contig 1, DNA
sequence - Ostreococcus tauri
Length = 293
Score = 50.0 bits (114), Expect = 3e-05
Identities = 25/61 (40%), Positives = 40/61 (65%)
Frame = -1
Query: 270 SIAFKQSLRILLLECQQFTGSLTDASERVLDAPHFTLVAETILSDDLQLLIKTRLLERTS 91
S+ + +LR+LL++ +Q + + + L AP +LVA+ L+DDLQL ++ LLERTS
Sbjct: 136 SLTLEDALRVLLIKRKQHASGVAELVKGELHAPQLSLVAKAELTDDLQLGVEAILLERTS 195
Query: 90 R 88
R
Sbjct: 196 R 196
Score = 43.2 bits (97), Expect = 0.004
Identities = 25/46 (54%), Positives = 26/46 (56%)
Frame = -2
Query: 518 KSMCLPESRRTMNEGMFTTCLRTRICLCLIKMRA*WIDFARPALNT 381
KSMC S RT G FT CL TRI IK RA D ARP+L T
Sbjct: 64 KSMCFWLSVRTKKLGTFTICLPTRIWRWRIKTRAWCTDLARPSLKT 109
>UniRef50_Q82T00 Cluster: 30S ribosomal protein S4 B; n=3;
Betaproteobacteria|Rep: 30S ribosomal protein S4 B -
Nitrosomonas europaea
Length = 205
Score = 47.6 bits (108), Expect = 2e-04
Identities = 27/65 (41%), Positives = 37/65 (56%)
Frame = +1
Query: 337 GLKIEDFLERRLQTQVFNAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHID 516
G + LERRL VF AG A ++ AR L+ RH+R+ + VNIPS +RL+ G I
Sbjct: 85 GETLLQLLERRLDNVVFRAGFAPTVIAARQLVSHRHVRLNGKPVNIPS--IRLNVGDEIT 142
Query: 517 FSLKS 531
+S
Sbjct: 143 IKPES 147
>UniRef50_A5BYX8 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 187
Score = 47.2 bits (107), Expect = 2e-04
Identities = 23/53 (43%), Positives = 32/53 (60%)
Frame = +1
Query: 67 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELL 225
+ KT+ R + K LD ELK IG Y LR KRE+W V+ +LA ++K L+
Sbjct: 119 YGKTFKESRSSYGKGFLDAELKFIGGYELRCKRELWSVQMSLAALQKYFSSLM 171
>UniRef50_O21263 Cluster: Mitochondrial ribosomal protein S4; n=1;
Reclinomonas americana|Rep: Mitochondrial ribosomal
protein S4 - Reclinomonas americana
Length = 249
Score = 46.4 bits (105), Expect = 4e-04
Identities = 19/53 (35%), Positives = 33/53 (62%)
Frame = +1
Query: 334 LGLKIEDFLERRLQTQVFNAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 492
+G + LERRL ++ AG SI+ AR+L+ +H+ V ++ NI S++V+
Sbjct: 123 IGDNLIKMLERRLDIIIYRAGFVNSIYQARLLVNHKHVLVNNKIQNISSYLVQ 175
>UniRef50_Q8RE43 Cluster: 30S ribosomal protein S4; n=6;
Bacteria|Rep: 30S ribosomal protein S4 - Fusobacterium
nucleatum subsp. nucleatum
Length = 195
Score = 46.4 bits (105), Expect = 4e-04
Identities = 26/64 (40%), Positives = 38/64 (59%)
Frame = +1
Query: 304 DEKQMKLDYVLGLKIEDFLERRLQTQVFNAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 483
+E KL V GL + ++LERRL+ V+ G AK+ AR ++ HI V + VNI SF
Sbjct: 69 EEAARKLG-VTGLTLIEYLERRLENVVYRLGFAKTRRQARQIVSHGHIAVNGRRVNIASF 127
Query: 484 IVRL 495
V++
Sbjct: 128 RVKV 131
>UniRef50_Q9NV31 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3; n=13; Euteleostomi|Rep: U3 small nucleolar
ribonucleoprotein protein IMP3 - Homo sapiens (Human)
Length = 184
Score = 46.0 bits (104), Expect = 5e-04
Identities = 31/122 (25%), Positives = 53/122 (43%)
Frame = +1
Query: 124 ELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNAXXXXXXXXXXX 303
EL+++ Y L+ + + R +R+ AR L L E+D R+ +A
Sbjct: 30 ELRVLRRYRLQRREDYTRYNQLSRAVRELARRLRDLPERDQFRV-RASAALLDKLYALGL 88
Query: 304 DEKQMKLDYVLGLKIEDFLERRLQTQVFNAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 483
+ L+ + F RRL T + +A+ + A + Q H+RV VV P+F
Sbjct: 89 VPTRGSLELCDFVTASSFCRRRLPTVLLKLRMAQHLQAAVAFVEQGHVRVGPDVVTDPAF 148
Query: 484 IV 489
+V
Sbjct: 149 LV 150
>UniRef50_Q4AEQ5 Cluster: Ribosomal protein S4:RNA-binding S4; n=1;
Chlorobium phaeobacteroides BS1|Rep: Ribosomal protein
S4:RNA-binding S4 - Chlorobium phaeobacteroides BS1
Length = 134
Score = 45.6 bits (103), Expect = 7e-04
Identities = 21/51 (41%), Positives = 30/51 (58%)
Frame = +1
Query: 331 VLGLKIEDFLERRLQTQVFNAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 483
+ G + F+E RL V+ G+A + AR L+ RHI V Q+VN+PSF
Sbjct: 82 ITGENLLKFIEARLDNTVYRLGIAPTRSGARQLVSHRHITVNGQIVNVPSF 132
>UniRef50_Q8SRU8 Cluster: U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN; n=1;
Encephalitozoon cuniculi|Rep: U3 SMALL NUCLEOLAR
RIBONUCLEOPROTEIN - Encephalitozoon cuniculi
Length = 180
Score = 45.6 bits (103), Expect = 7e-04
Identities = 32/118 (27%), Positives = 49/118 (41%)
Frame = +1
Query: 136 IGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNAXXXXXXXXXXXDEKQ 315
I +YGLR++ E + + ++RK A L L+E DP R K
Sbjct: 32 IAKYGLRDREEYTKYSRIVGKVRKLAEALARLKESDPVRTTITKKLVGRLYSVGVI--KN 89
Query: 316 MKLDYVLGLKIEDFLERRLQTQVFNAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 489
KL + + F ERRL + + S A + H+R+ +VV PS I+
Sbjct: 90 RKLVDCTKVTVSSFCERRLPMVMKRIRMVPSFKDATRFVEHGHVRLGSKVVYDPSTII 147
>UniRef50_P48270 Cluster: Chloroplast 30S ribosomal protein S4; n=2;
Chlorophyceae|Rep: Chloroplast 30S ribosomal protein S4
- Chlamydomonas reinhardtii
Length = 257
Score = 44.8 bits (101), Expect = 0.001
Identities = 25/61 (40%), Positives = 33/61 (54%)
Frame = +1
Query: 310 KQMKLDYVLGLKIEDFLERRLQTQVFNAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 489
K K+ G + FLE RL VF +A +I AR LI HIRV + VNIPS++
Sbjct: 92 KAKKIKESTGQVLLQFLEMRLDNIVFRLNMAPTIPAARQLISHGHIRVNNKKVNIPSYMC 151
Query: 490 R 492
+
Sbjct: 152 K 152
>UniRef50_A5KQD5 Cluster: Putative uncharacterized protein; n=2;
Ruminococcus|Rep: Putative uncharacterized protein -
Ruminococcus torques ATCC 27756
Length = 181
Score = 44.0 bits (99), Expect = 0.002
Identities = 20/61 (32%), Positives = 36/61 (59%)
Frame = +1
Query: 310 KQMKLDYVLGLKIEDFLERRLQTQVFNAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 489
K +++ + G + LE RL +F GLA++ AR ++ +H+ V + VNIPS++V
Sbjct: 53 KAKQMEGMTGENLMRILESRLDNVIFRMGLARTRKEARQIVDHKHVLVNGKQVNIPSYLV 112
Query: 490 R 492
+
Sbjct: 113 K 113
>UniRef50_P59129 Cluster: 30S ribosomal protein S4; n=19;
Bacteria|Rep: 30S ribosomal protein S4 - Chlorobium
tepidum
Length = 203
Score = 44.0 bits (99), Expect = 0.002
Identities = 27/67 (40%), Positives = 35/67 (52%)
Frame = +1
Query: 331 VLGLKIEDFLERRLQTQVFNAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKH 510
V G + LERRL V+ G + S AR L+ H+ V + VNIPSF+V G
Sbjct: 82 VTGDNLVKMLERRLDNVVYRCGFSPSRAGARQLVTHGHMLVNGKKVNIPSFLV--SPGDQ 139
Query: 511 IDFSLKS 531
I+F KS
Sbjct: 140 IEFRQKS 146
>UniRef50_Q6AP44 Cluster: 30S ribosomal protein S4; n=37;
Bacteria|Rep: 30S ribosomal protein S4 - Desulfotalea
psychrophila
Length = 210
Score = 43.6 bits (98), Expect = 0.003
Identities = 23/53 (43%), Positives = 31/53 (58%)
Frame = +1
Query: 331 VLGLKIEDFLERRLQTQVFNAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 489
V G + LERRL VF AG A S AR ++R +HI + + V+IPS+ V
Sbjct: 88 VAGENLLILLERRLDNAVFRAGFASSRTQARQIVRHKHILINGKRVDIPSYQV 140
>UniRef50_O66484 Cluster: 30S ribosomal protein S4; n=17;
Bacteria|Rep: 30S ribosomal protein S4 - Aquifex
aeolicus
Length = 211
Score = 42.3 bits (95), Expect = 0.007
Identities = 24/65 (36%), Positives = 35/65 (53%)
Frame = +1
Query: 337 GLKIEDFLERRLQTQVFNAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHID 516
G + +LERRL V+ G A + AR L+ H+ V + VNIPS++V + G I+
Sbjct: 89 GEMLLQYLERRLDNVVYRLGFASTRRQARQLVAHGHVLVNGKKVNIPSYLV--EPGDVIE 146
Query: 517 FSLKS 531
KS
Sbjct: 147 IKEKS 151
>UniRef50_Q0D4G1 Cluster: Os07g0628300 protein; n=2; Oryza sativa
(japonica cultivar-group)|Rep: Os07g0628300 protein -
Oryza sativa subsp. japonica (Rice)
Length = 94
Score = 41.9 bits (94), Expect = 0.009
Identities = 20/27 (74%), Positives = 23/27 (85%)
Frame = +1
Query: 451 VRKQVVNIPSFIVRLDSGKHIDFSLKS 531
V +Q+VNIPSFIVRL+S KHI FSL S
Sbjct: 27 VGRQLVNIPSFIVRLESEKHIAFSLTS 53
>UniRef50_Q17AL1 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3 (U3 snoRNP protein IMP3), putative; n=3;
Coelomata|Rep: U3 small nucleolar ribonucleoprotein
protein IMP3 (U3 snoRNP protein IMP3), putative - Aedes
aegypti (Yellowfever mosquito)
Length = 181
Score = 41.5 bits (93), Expect = 0.012
Identities = 31/123 (25%), Positives = 56/123 (45%), Gaps = 1/123 (0%)
Frame = +1
Query: 124 ELKIIGEYGLRNKREVWRVKYTLAR-IRKAARELLTLEEKDPKRLFEGNAXXXXXXXXXX 300
E+KI+ Y ++ KRE + L+R IR+ ++ ++ K P R E +
Sbjct: 29 EMKIMRRYNVQ-KREDYTTYNKLSRNIRELTNKIAEVDAKHPFRT-EMSGLLLEKLYVLG 86
Query: 301 XDEKQMKLDYVLGLKIEDFLERRLQTQVFNAGLAKSIHHARILIRQRHIRVRKQVVNIPS 480
+ L+ + F RRL + +++++ HA +I H+RV VV P+
Sbjct: 87 LIPTKWDLENASKISASSFCRRRLPVVLLRNKMSENLKHATQMIEHGHVRVGTDVVKDPA 146
Query: 481 FIV 489
F+V
Sbjct: 147 FLV 149
>UniRef50_Q0TMU2 Cluster: 30S ribosomal protein S4 B; n=13;
Clostridiaceae|Rep: 30S ribosomal protein S4 B -
Clostridium perfringens (strain ATCC 13124 / NCTC 8237 /
Type A)
Length = 197
Score = 41.5 bits (93), Expect = 0.012
Identities = 24/58 (41%), Positives = 30/58 (51%)
Frame = +1
Query: 358 LERRLQTQVFNAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKS 531
LE RL V+ G A SI AR ++ H V + VNIPSF RL+ G + KS
Sbjct: 86 LESRLDNMVYRMGFASSIRQARQMVNHGHFLVNGKKVNIPSF--RLNIGDEVVLREKS 141
>UniRef50_Q6MIP0 Cluster: 30S ribosomal protein S4 B; n=1;
Bdellovibrio bacteriovorus|Rep: 30S ribosomal protein S4
B - Bdellovibrio bacteriovorus
Length = 208
Score = 41.5 bits (93), Expect = 0.012
Identities = 43/137 (31%), Positives = 62/137 (45%)
Frame = +1
Query: 85 TPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEG 264
TPR ++ RL EL +G+ G +R ++ L R RK + L LEEK R G
Sbjct: 7 TPRFKRQR-RLLTELPGMGKAGALERRPYPPGQHGLQR-RKYSEFALQLEEKQKLRFHYG 64
Query: 265 NAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFNAGLAKSIHHARILIRQRH 444
+K ++V L + LE+RL VF G A SI AR L+
Sbjct: 65 -LREEQFRRLINKAKKSKATNWVEALV--NLLEKRLDNVVFRLGFASSIPAARQLVSHGK 121
Query: 445 IRVRKQVVNIPSFIVRL 495
+ V + VNI S I+++
Sbjct: 122 VLVNGKKVNIGSQIIKV 138
>UniRef50_P58134 Cluster: Plastid 30S ribosomal protein S4; n=2;
Eukaryota|Rep: Plastid 30S ribosomal protein S4 -
Astasia longa (Euglenophycean alga)
Length = 206
Score = 41.5 bits (93), Expect = 0.012
Identities = 26/59 (44%), Positives = 33/59 (55%)
Frame = +1
Query: 307 EKQMKLDYVLGLKIEDFLERRLQTQVFNAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 483
+K +KL G + LE RL V+ GLA +I +R LI HI V +VVNIPSF
Sbjct: 74 KKAIKLKGSSGENLLVALEMRLDNIVYRLGLAPTIISSRQLINHGHIYVDGKVVNIPSF 132
>UniRef50_A6DLN6 Cluster: 30S ribosomal protein S4; n=1;
Lentisphaera araneosa HTCC2155|Rep: 30S ribosomal
protein S4 - Lentisphaera araneosa HTCC2155
Length = 205
Score = 40.7 bits (91), Expect = 0.021
Identities = 23/62 (37%), Positives = 32/62 (51%)
Frame = +1
Query: 307 EKQMKLDYVLGLKIEDFLERRLQTQVFNAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 486
++ KL V G + LE RL V+ G A + AR L+ HIR+ + NIPS+
Sbjct: 77 DRAAKLSGVTGNNLMVLLEARLDNVVYRLGFAPTRSAARQLVGHGHIRINGRRCNIPSYS 136
Query: 487 VR 492
VR
Sbjct: 137 VR 138
>UniRef50_Q5YGE8 Cluster: Small ribosomal protein 4; n=1;
Calycularia crispula|Rep: Small ribosomal protein 4 -
Calycularia crispula
Length = 197
Score = 40.7 bits (91), Expect = 0.021
Identities = 19/49 (38%), Positives = 27/49 (55%)
Frame = +1
Query: 337 GLKIEDFLERRLQTQVFNAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 483
G + LE RL +F G+A +I AR L+ RHI + V+IPS+
Sbjct: 76 GQVLLQLLEMRLDNTIFRLGMASTIPGARQLVSHRHILINNDAVDIPSY 124
>UniRef50_A5USG3 Cluster: Ribosomal protein S4; n=4;
Chloroflexaceae|Rep: Ribosomal protein S4 - Roseiflexus
sp. RS-1
Length = 206
Score = 40.3 bits (90), Expect = 0.027
Identities = 23/63 (36%), Positives = 31/63 (49%)
Frame = +1
Query: 307 EKQMKLDYVLGLKIEDFLERRLQTQVFNAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 486
EK + G + LERRL V+ G A + AR L+ HI V + NIPS+
Sbjct: 75 EKAQRFPGETGAYLFILLERRLDNVVYRLGFATTRAQARQLVSHGHITVNGRKTNIPSYT 134
Query: 487 VRL 495
VR+
Sbjct: 135 VRV 137
>UniRef50_Q5DQ32 Cluster: Ribosomal protein small subunit 4; n=6;
Filicales|Rep: Ribosomal protein small subunit 4 -
Asplenium trichomanes subsp. inexpectans
Length = 169
Score = 40.3 bits (90), Expect = 0.027
Identities = 19/42 (45%), Positives = 27/42 (64%)
Frame = +1
Query: 358 LERRLQTQVFNAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 483
LE RL +F+ G+A +I AR L+ RHI V +V+IPS+
Sbjct: 54 LEMRLDNVLFHLGMASTIPAARQLVNHRHILVNNCIVDIPSY 95
>UniRef50_A7AVJ4 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3-like protein; n=1; Babesia bovis|Rep: U3
small nucleolar ribonucleoprotein protein IMP3-like
protein - Babesia bovis
Length = 195
Score = 40.3 bits (90), Expect = 0.027
Identities = 41/145 (28%), Positives = 57/145 (39%), Gaps = 11/145 (7%)
Frame = +1
Query: 121 QELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRL-FEGNAXXXXXXXXX 297
+E KI+ Y +++ E + + RI K EL L E D R+ N
Sbjct: 27 RETKILRRYYIQDPEEYHKYNKLVGRITKLVSELRKLPEDDSFRIKMTDNLMEKLYVFKM 86
Query: 298 XX---DEKQMKLDYVLG-------LKIEDFLERRLQTQVFNAGLAKSIHHARILIRQRHI 447
QM L V G L F RRL T + + + A I Q HI
Sbjct: 87 MYIALSRYQMGLISVRGNLELCERLSASVFCRRRLATVLVQRKFCEHLKQAVTYIEQGHI 146
Query: 448 RVRKQVVNIPSFIVRLDSGKHIDFS 522
RV VVNIP++ V + HI ++
Sbjct: 147 RVGLDVVNIPAYHVTRELEDHITWA 171
>UniRef50_Q74K05 Cluster: 30S ribosomal protein S4; n=107; cellular
organisms|Rep: 30S ribosomal protein S4 - Lactobacillus
johnsonii
Length = 203
Score = 39.9 bits (89), Expect = 0.036
Identities = 25/65 (38%), Positives = 35/65 (53%)
Frame = +1
Query: 337 GLKIEDFLERRLQTQVFNAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHID 516
G+ LERRL V+ GLA + AR L+ HI V + V+IPS+ V++ G+ I
Sbjct: 84 GVNFMALLERRLDNIVYRLGLASTREQARQLVNHGHILVDGKRVDIPSYEVKV--GQEIS 141
Query: 517 FSLKS 531
KS
Sbjct: 142 LRDKS 146
>UniRef50_A3HXD0 Cluster: 30S ribosomal protein S4; n=1;
Algoriphagus sp. PR1|Rep: 30S ribosomal protein S4 -
Algoriphagus sp. PR1
Length = 201
Score = 39.5 bits (88), Expect = 0.047
Identities = 18/54 (33%), Positives = 31/54 (57%)
Frame = +1
Query: 331 VLGLKIEDFLERRLQTQVFNAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 492
+ G + LE RL V+ G++ + AR L+ +HI V ++VNIPS+ ++
Sbjct: 81 ITGENLLQLLEARLDNTVYRMGISPTRRGARQLVSHKHILVNGELVNIPSYSLK 134
>UniRef50_O01513 Cluster: Putative 40S ribosomal protein S4-like;
n=4; Bilateria|Rep: Putative 40S ribosomal protein
S4-like - Caenorhabditis elegans
Length = 183
Score = 39.5 bits (88), Expect = 0.047
Identities = 35/127 (27%), Positives = 56/127 (44%), Gaps = 3/127 (2%)
Frame = +1
Query: 160 KREVWRVKYTLA-RIRKAARELLTLEEKDPKR--LFEGNAXXXXXXXXXXXDEKQMKLDY 330
KRE + + TLA + R+ A + L E DP R E + ++
Sbjct: 40 KREHYALYNTLAAKSREVADLIKNLSESDPFRSKCTEDMLTKFYAAGLVPTSDTLERIGK 99
Query: 331 VLGLKIEDFLERRLQTQVFNAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKH 510
V G F RRL + N G+ +S+ A L+ Q H+R+ ++V P+F+V S
Sbjct: 100 VTGAS---FARRRLPVVMRNIGMCESVKTASDLVEQGHVRIGTKLVTDPAFMVTRSSEDM 156
Query: 511 IDFSLKS 531
I ++ S
Sbjct: 157 ITWTKAS 163
>UniRef50_Q2JUD6 Cluster: 30S ribosomal protein S4; n=2041; cellular
organisms|Rep: 30S ribosomal protein S4 - Synechococcus
sp. (strain JA-3-3Ab) (Cyanobacteria
bacteriumYellowstone A-Prime)
Length = 203
Score = 39.5 bits (88), Expect = 0.047
Identities = 31/97 (31%), Positives = 42/97 (43%)
Frame = +1
Query: 193 ARIRKAARELLTLEEKDPKRLFEGNAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRL 372
A +K + + LEEK RL G + K + GL + LE RL
Sbjct: 39 AERKKKSEYAIRLEEKQKVRLNYGVSERQMLRYM----RKARRSKGSTGLALLQMLEMRL 94
Query: 373 QTQVFNAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 483
VF G+A +I AR L+ HI V + V IPS+
Sbjct: 95 DCIVFRLGMAPTIPAARQLVSHGHIEVNGRKVTIPSY 131
>UniRef50_Q7YLR6 Cluster: Small ribosomal protein 4; n=10;
Coniferales|Rep: Small ribosomal protein 4 - Podocarpus
latifolius
Length = 222
Score = 39.1 bits (87), Expect = 0.063
Identities = 20/49 (40%), Positives = 29/49 (59%)
Frame = +1
Query: 337 GLKIEDFLERRLQTQVFNAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 483
G + LE RL +F G+A +I AR L+ RHI V ++V+IPS+
Sbjct: 66 GQVLLQLLEMRLDNILFRLGMALTIPGARQLVNHRHILVNGRMVDIPSY 114
>UniRef50_A7QX06 Cluster: Chromosome chr14 scaffold_211, whole
genome shotgun sequence; n=2; Vitis vinifera|Rep:
Chromosome chr14 scaffold_211, whole genome shotgun
sequence - Vitis vinifera (Grape)
Length = 276
Score = 39.1 bits (87), Expect = 0.063
Identities = 19/56 (33%), Positives = 30/56 (53%)
Frame = +1
Query: 319 KLDYVLGLKIEDFLERRLQTQVFNAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 486
K + +G + LE L +F G+A +I AR L+ RHI V ++V+IP +
Sbjct: 195 KAKWAIGRVLLQLLEMHLDNILFRLGMASTILGARQLVNHRHILVNGRIVDIPRLV 250
>UniRef50_Q9G884 Cluster: Ribosomal protein S4; n=1; Malawimonas
jakobiformis|Rep: Ribosomal protein S4 - Malawimonas
jakobiformis
Length = 225
Score = 39.1 bits (87), Expect = 0.063
Identities = 19/48 (39%), Positives = 27/48 (56%)
Frame = +1
Query: 352 DFLERRLQTQVFNAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRL 495
+ LERRL T +F A S +AR LI HI + +VN+ S +V +
Sbjct: 107 NLLERRLDTILFRINWASSFFNARQLINHGHILINGNIVNVSSHLVNI 154
>UniRef50_Q1CXF1 Cluster: 30S ribosomal protein S4 B; n=2;
Cystobacterineae|Rep: 30S ribosomal protein S4 B -
Myxococcus xanthus (strain DK 1622)
Length = 210
Score = 39.1 bits (87), Expect = 0.063
Identities = 23/61 (37%), Positives = 32/61 (52%)
Frame = +1
Query: 337 GLKIEDFLERRLQTQVFNAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHID 516
G + LE RL + V AGLA SI AR +R ++ V + +IPSF R+ G +
Sbjct: 89 GTVLLQLLESRLDSLVLRAGLATSIRQARQFVRHGYLHVDGKRADIPSF--RVKPGSEVR 146
Query: 517 F 519
F
Sbjct: 147 F 147
>UniRef50_P32899 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3; n=34; Eukaryota|Rep: U3 small nucleolar
ribonucleoprotein protein IMP3 - Saccharomyces
cerevisiae (Baker's yeast)
Length = 183
Score = 38.7 bits (86), Expect = 0.083
Identities = 26/123 (21%), Positives = 50/123 (40%)
Frame = +1
Query: 121 QELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNAXXXXXXXXXX 300
++ +++ Y ++N+ + + IR+ A +L L DP R
Sbjct: 28 RDTQVMRTYHIQNREDYHKYNRICGDIRRLANKLSLLPPTDPFRRKHEQLLLDKLYAMGV 87
Query: 301 XDEKQMKLDYVLGLKIEDFLERRLQTQVFNAGLAKSIHHARILIRQRHIRVRKQVVNIPS 480
K D + + RRL + +A++I A I Q H+RV ++N P+
Sbjct: 88 LTTKSKISDLENKVTVSAICRRRLPVIMHRLKMAETIQDAVKFIEQGHVRVGPNLINDPA 147
Query: 481 FIV 489
++V
Sbjct: 148 YLV 150
>UniRef50_Q7R0S4 Cluster: GLP_186_71509_70955; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_186_71509_70955 - Giardia lamblia
ATCC 50803
Length = 184
Score = 38.3 bits (85), Expect = 0.11
Identities = 28/118 (23%), Positives = 48/118 (40%)
Frame = +1
Query: 136 IGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNAXXXXXXXXXXXDEKQ 315
+ +YG+ ++RE+ + T+ +IR L L + + R+ D Q
Sbjct: 32 MNKYGVYDRRELITYRQTMRKIRHMVELLTQLPQDNNVRIELTRRLSRILYDMGVVDNAQ 91
Query: 316 MKLDYVLGLKIEDFLERRLQTQVFNAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 489
LD + L L RRL + + + I ++Q H+RV VV P+ V
Sbjct: 92 ASLDDISKLNSSALLLRRLPCIMMKLKMVQKIQDGVRFVKQGHVRVGPNVVVNPALHV 149
>UniRef50_P56799 Cluster: Chloroplast 30S ribosomal protein S4;
n=1123; Embryophyta|Rep: Chloroplast 30S ribosomal
protein S4 - Arabidopsis thaliana (Mouse-ear cress)
Length = 201
Score = 37.9 bits (84), Expect = 0.14
Identities = 19/49 (38%), Positives = 28/49 (57%)
Frame = +1
Query: 337 GLKIEDFLERRLQTQVFNAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 483
G + LE RL +F G+A +I AR L+ HI V ++V+IPS+
Sbjct: 80 GQVLLQLLEMRLDNILFRLGMALTIPQARQLVNHGHILVNGRIVDIPSY 128
>UniRef50_Q2GDI3 Cluster: 30S ribosomal protein S4; n=8;
Rickettsiales|Rep: 30S ribosomal protein S4 -
Neorickettsia sennetsu (strain Miyayama)
Length = 205
Score = 37.1 bits (82), Expect = 0.25
Identities = 16/45 (35%), Positives = 29/45 (64%)
Frame = +1
Query: 358 LERRLQTQVFNAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 492
LE R+ + ++ +G+ +I AR LI +H+ V ++VNI SF ++
Sbjct: 91 LESRVSSVLYRSGMVPTIFAARQLISHKHVTVNGEIVNICSFTLK 135
>UniRef50_A0JX91 Cluster: 30S ribosomal protein S4; n=20;
Actinobacteria (class)|Rep: 30S ribosomal protein S4 -
Arthrobacter sp. (strain FB24)
Length = 208
Score = 37.1 bits (82), Expect = 0.25
Identities = 23/61 (37%), Positives = 32/61 (52%)
Frame = +1
Query: 307 EKQMKLDYVLGLKIEDFLERRLQTQVFNAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 486
E+ + + G + + LE RL V AG A++I AR L+ RHI V V+ PSF
Sbjct: 76 EEARRTKGLTGENLIELLEMRLDALVLRAGFARTIAQARQLVVHRHILVDGIRVDRPSFR 135
Query: 487 V 489
V
Sbjct: 136 V 136
>UniRef50_Q9XQQ7 Cluster: Apicoplast 30S ribosomal protein S4; n=1;
Toxoplasma gondii|Rep: Apicoplast 30S ribosomal protein
S4 - Toxoplasma gondii
Length = 198
Score = 37.1 bits (82), Expect = 0.25
Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Frame = +1
Query: 307 EKQMK--LDYVLGLKIEDFL---ERRLQTQVFNAGLAKSIHHARILIRQRHIRVRKQVVN 471
E Q+K Y+ LKI + + E RL +F G AKSI+ AR LI I + +V
Sbjct: 61 ENQIKKYFKYIKLLKIFNLIQIIELRLDATIFRLGFAKSINQARQLITHGFIFINSILVK 120
Query: 472 IPSFIV 489
PSFI+
Sbjct: 121 KPSFIL 126
>UniRef50_Q06J34 Cluster: Chloroplast 30S ribosomal protein S4; n=1;
Bigelowiella natans|Rep: Chloroplast 30S ribosomal
protein S4 - Bigelowiella natans (Pedinomonas
minutissima) (Chlorarachnion sp.(strain CCMP 621))
Length = 194
Score = 37.1 bits (82), Expect = 0.25
Identities = 19/49 (38%), Positives = 26/49 (53%)
Frame = +1
Query: 337 GLKIEDFLERRLQTQVFNAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 483
G K+ LE RL T ++ G ++ AR LI HI V + V+IP F
Sbjct: 75 GDKLLQLLEMRLDTLLYRTGFVPTVASARQLISHGHINVNGKKVDIPGF 123
>UniRef50_Q9X1I3 Cluster: 30S ribosomal protein S4; n=14;
Bacteria|Rep: 30S ribosomal protein S4 - Thermotoga
maritima
Length = 209
Score = 36.3 bits (80), Expect = 0.44
Identities = 18/45 (40%), Positives = 25/45 (55%)
Frame = +1
Query: 358 LERRLQTQVFNAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 492
LE RL V+ G A + AR L+ H V + VNIPS+++R
Sbjct: 96 LEARLDNVVYRMGFAINRRQARQLVNHGHFLVNGKKVNIPSYLLR 140
>UniRef50_O51560 Cluster: 30S ribosomal protein S4; n=3; Borrelia
burgdorferi group|Rep: 30S ribosomal protein S4 -
Borrelia burgdorferi (Lyme disease spirochete)
Length = 209
Score = 36.3 bits (80), Expect = 0.44
Identities = 21/54 (38%), Positives = 29/54 (53%)
Frame = +1
Query: 331 VLGLKIEDFLERRLQTQVFNAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 492
V G + LERR+ V+ AG A S HAR ++ I + + V IPS I+R
Sbjct: 85 VTGDNLLSILERRIDNVVYRAGFAISRAHARQIVSHGIIILNGRRVTIPSIILR 138
>UniRef50_Q9XPI8 Cluster: Ribosomal protein S4; n=2; Dictyostelium
discoideum|Rep: Ribosomal protein S4 - Dictyostelium
discoideum (Slime mold)
Length = 300
Score = 35.5 bits (78), Expect = 0.77
Identities = 11/46 (23%), Positives = 29/46 (63%)
Frame = +1
Query: 358 LERRLQTQVFNAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRL 495
LE+R+ + +G +S++ AR +I +H+ V ++ ++P +++ +
Sbjct: 144 LEKRVDMVLLRSGFVRSLYEARQIINHKHLLVNGKIASLPGYMINV 189
>UniRef50_Q5LNM2 Cluster: 30S ribosomal protein S4; n=86;
Bacteria|Rep: 30S ribosomal protein S4 - Silicibacter
pomeroyi
Length = 206
Score = 35.5 bits (78), Expect = 0.77
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = +1
Query: 337 GLKIEDFLERRLQTQVFNAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 492
G + LERRL V+ A ++ AR + H+ V + VNIPS+ V+
Sbjct: 85 GENLIGLLERRLDAVVYRAKFVPTVFAARQFVNHGHVLVNGKRVNIPSYRVK 136
>UniRef50_Q92BB2 Cluster: 30S ribosomal protein S4; n=35;
Bacteria|Rep: 30S ribosomal protein S4 - Listeria
innocua
Length = 200
Score = 35.5 bits (78), Expect = 0.77
Identities = 19/44 (43%), Positives = 27/44 (61%)
Frame = +1
Query: 358 LERRLQTQVFNAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 489
LE+RL V+ GLA++ AR L+ HI V + V+IPS+ V
Sbjct: 90 LEQRLDNIVYRLGLARTRRAARQLVNHGHITVDGKRVDIPSYQV 133
>UniRef50_Q54XG2 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 177
Score = 35.1 bits (77), Expect = 1.0
Identities = 24/123 (19%), Positives = 52/123 (42%)
Frame = +1
Query: 121 QELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNAXXXXXXXXXX 300
++++ IG +GL+ K E +A+ + +E+ L ++DP + +
Sbjct: 29 KDVENIGRFGLKGKEEYAEYTKLVAQYKHVLKEISDLSDQDPVKQKLLSDLSEKLYNMGV 88
Query: 301 XDEKQMKLDYVLGLKIEDFLERRLQTQVFNAGLAKSIHHARILIRQRHIRVRKQVVNIPS 480
D KQ ++ + F RR + A+ + A L+ H+R+ + + P+
Sbjct: 89 IDLKQP--SELVKVNASSFCRRRAVVMLVKKKFAEHLTQAFGLLSHGHVRIGPETIQDPA 146
Query: 481 FIV 489
I+
Sbjct: 147 LII 149
>UniRef50_Q2JFE9 Cluster: 30S ribosomal protein S4; n=25;
Bacteria|Rep: 30S ribosomal protein S4 - Frankia sp.
(strain CcI3)
Length = 209
Score = 35.1 bits (77), Expect = 1.0
Identities = 18/49 (36%), Positives = 27/49 (55%)
Frame = +1
Query: 337 GLKIEDFLERRLQTQVFNAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 483
G ++ LE RL V+ G A S AR +R H++V + V+IPS+
Sbjct: 89 GDELLKILESRLDNVVYRGGFAPSRDAARQAVRHGHVQVNGRKVDIPSY 137
>UniRef50_A2E3D0 Cluster: S4 domain containing protein; n=1;
Trichomonas vaginalis G3|Rep: S4 domain containing
protein - Trichomonas vaginalis G3
Length = 182
Score = 34.3 bits (75), Expect = 1.8
Identities = 27/131 (20%), Positives = 54/131 (41%)
Frame = +1
Query: 130 KIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNAXXXXXXXXXXXDE 309
+++G Y L N E + + +I++ L + +D R+ +
Sbjct: 31 QVVGIYCLDNSEEYHQYNRLVGKIQRFTNTLRQMGPEDKVRIDLTKQFVDRVYKLGIIET 90
Query: 310 KQMKLDYVLGLKIEDFLERRLQTQVFNAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 489
Q L + + +RRL + N + I A L+RQ H+R+ VV P+ +V
Sbjct: 91 PQ--LSECEKINVVAICKRRLPVIMVNLKFCQRISEADKLVRQGHVRIGPDVVTNPATLV 148
Query: 490 RLDSGKHIDFS 522
+ +I+++
Sbjct: 149 SKEMEDYINWA 159
>UniRef50_Q2UJB9 Cluster: Predicted protein; n=1; Aspergillus
oryzae|Rep: Predicted protein - Aspergillus oryzae
Length = 950
Score = 34.3 bits (75), Expect = 1.8
Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 2/93 (2%)
Frame = -3
Query: 478 KECSPPACGHEYASV*SRCGHDGLTSQDQH*TPESEDGAPRSPQSSNRAHNPVSSVSHQA 299
++ + PA E GHD + + + P D +P S +H P S+ H
Sbjct: 564 EQVNTPAPQPEQPKDHEESGHDNQSHEIESPKPTGADSSPHEDPSREDSHGPSSTPVHGQ 623
Query: 298 LRP*PDDVVEHCLQTIS*DPS--PRVSTVHGQP 206
P D + + ++ S + S P + VHGQP
Sbjct: 624 PEPTGVDGIHNQEESSSHEDSHGPSSTPVHGQP 656
>UniRef50_Q8IKM0 Cluster: Ribosomal protein S4, putative; n=1;
Plasmodium falciparum 3D7|Rep: Ribosomal protein S4,
putative - Plasmodium falciparum (isolate 3D7)
Length = 159
Score = 33.9 bits (74), Expect = 2.4
Identities = 17/61 (27%), Positives = 30/61 (49%)
Frame = +1
Query: 340 LKIEDFLERRLQTQVFNAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDF 519
+ + F RRL +F ++I A I+ +IR+ V+N PSF + + HI +
Sbjct: 75 ITVSSFCRRRLAVLLFRLKFVQTIKLAITYIQHGNIRIGNNVINNPSFHINRNMEDHIKW 134
Query: 520 S 522
+
Sbjct: 135 A 135
>UniRef50_Q4P328 Cluster: Helicase SWR1; n=1; Ustilago maydis|Rep:
Helicase SWR1 - Ustilago maydis (Smut fungus)
Length = 1830
Score = 33.5 bits (73), Expect = 3.1
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = +1
Query: 103 EKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRL 255
EK ++ L+ + ++ LR + WR+ + R RKAA E E+ D ++L
Sbjct: 615 EKKAEERRLRALAKWTLREVLKQWRLAVNVVRARKAAAEKAEKEKSDKEQL 665
>UniRef50_P46743 Cluster: Mitochondrial ribosomal protein S4; n=1;
Prototheca wickerhamii|Rep: Mitochondrial ribosomal
protein S4 - Prototheca wickerhamii
Length = 511
Score = 33.5 bits (73), Expect = 3.1
Identities = 20/54 (37%), Positives = 29/54 (53%)
Frame = +1
Query: 358 LERRLQTQVFNAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDF 519
+E+RL ++ +G K+I AR R I V +V IPS I L+SG I +
Sbjct: 200 IEKRLDVVLYRSGFTKTIVAARQACRHSQIYVNSKVCRIPSTI--LESGDIISY 251
>UniRef50_Q9Z5U7 Cluster: 30S ribosomal protein S4; n=5;
Alphaproteobacteria|Rep: 30S ribosomal protein S4 -
Zymomonas mobilis
Length = 204
Score = 33.5 bits (73), Expect = 3.1
Identities = 23/58 (39%), Positives = 29/58 (50%)
Frame = +1
Query: 358 LERRLQTQVFNAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKS 531
LERRL V+ A A +I AR L+ HIRV NI S R++ G I K+
Sbjct: 92 LERRLDMIVYRAKFAPTIFAARQLVSHGHIRVNGVKCNIAS--RRVNPGDEISLGSKA 147
>UniRef50_UPI0000498936 Cluster: U3 small nucleolar
ribonucleoprotein subunit; n=2; Entamoeba histolytica
HM-1:IMSS|Rep: U3 small nucleolar ribonucleoprotein
subunit - Entamoeba histolytica HM-1:IMSS
Length = 186
Score = 33.1 bits (72), Expect = 4.1
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +1
Query: 352 DFLERRLQTQVFNAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 489
DF RRL V + + A LI+Q HI+V V+ P++IV
Sbjct: 105 DFCRRRLAIVVKAKKMVTDVTQAETLIQQGHIKVGPDVIRNPAYIV 150
>UniRef50_UPI0000084740 Cluster: lethal (2) 35Bb CG31834-PA; n=1;
Drosophila melanogaster|Rep: lethal (2) 35Bb CG31834-PA
- Drosophila melanogaster
Length = 291
Score = 33.1 bits (72), Expect = 4.1
Identities = 22/54 (40%), Positives = 29/54 (53%)
Frame = +1
Query: 346 IEDFLERRLQTQVFNAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGK 507
I DF RL TQ F KSIH++ +++ +KQ+ NIP FI R GK
Sbjct: 149 IADFGTARL-TQ-FRRTSTKSIHNSTASCQRQKEEKKKQIQNIPRFIPRKKKGK 200
>UniRef50_Q7YN81 Cluster: Apicoplast 30S ribosomal protein S4; n=1;
Eimeria tenella|Rep: Apicoplast 30S ribosomal protein S4
- Eimeria tenella
Length = 200
Score = 33.1 bits (72), Expect = 4.1
Identities = 21/60 (35%), Positives = 32/60 (53%)
Frame = +1
Query: 352 DFLERRLQTQVFNAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKS 531
+ +E RL +FN G + +I A+ LI + V +++ IPSF+ L G I S KS
Sbjct: 84 NIIEIRLDNTIFNLGYSITIAQAKQLIIHGYFFVNFKLIKIPSFL--LKKGDIITLSPKS 141
>UniRef50_A4IW51 Cluster: NAD dependent epimerase/dehydratase family
protein; n=11; Francisella tularensis|Rep: NAD dependent
epimerase/dehydratase family protein - Francisella
tularensis subsp. tularensis (strain WY96-3418)
Length = 293
Score = 32.3 bits (70), Expect = 7.2
Identities = 15/61 (24%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Frame = +1
Query: 328 YVLGLKIEDFLERRLQT-QVFNAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSG 504
Y L IE ++++L + ++FN + H ++ R +K+++ IP+F+++L G
Sbjct: 196 YDLSRAIEFIIDKKLDSKEIFNLTAPDACQHKLLVELLRKYLAKKRIIKIPTFMIKLMFG 255
Query: 505 K 507
+
Sbjct: 256 Q 256
>UniRef50_Q5KLM6 Cluster: Nam9 protein, mitochondrial, putative;
n=2; Filobasidiella neoformans|Rep: Nam9 protein,
mitochondrial, putative - Cryptococcus neoformans
(Filobasidiella neoformans)
Length = 317
Score = 32.3 bits (70), Expect = 7.2
Identities = 13/44 (29%), Positives = 27/44 (61%)
Frame = +1
Query: 358 LERRLQTQVFNAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 489
+ERRL +F + A+++ AR + Q H+++ QV+ P+ ++
Sbjct: 140 IERRLDVLIFRSCFAQNVWEARRYVVQGHVKLNGQVMRNPNIML 183
>UniRef50_A0B7K6 Cluster: Thiamine biosynthesis protein; n=1;
Methanosaeta thermophila PT|Rep: Thiamine biosynthesis
protein - Methanosaeta thermophila (strain DSM 6194 /
PT) (Methanothrixthermophila (strain DSM 6194 / PT))
Length = 335
Score = 32.3 bits (70), Expect = 7.2
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = +1
Query: 28 ELAKMVNNRVPSVFSKTY-VTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIR 204
ELA+ + S+ S+ P++P +ARL++ L+I GE GLR+ + RIR
Sbjct: 275 ELARRIGTYDISIGSQQCRAAPKKPVTRARLEEILRIEGELGLRDLAMELADGVEIVRIR 334
Query: 205 K 207
+
Sbjct: 335 R 335
>UniRef50_UPI0000E4A709 Cluster: PREDICTED: similar to EGF-like
protein; n=5; Strongylocentrotus purpuratus|Rep:
PREDICTED: similar to EGF-like protein -
Strongylocentrotus purpuratus
Length = 1686
Score = 31.9 bits (69), Expect = 9.5
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +3
Query: 372 SDSGVQCWSCEVNPSCPHLDQTEAYSCPQAGGE 470
SDSG C+V S P DQ +YS P GG+
Sbjct: 968 SDSGQASCLCDVGFSGPTCDQVSSYSIPMFGGD 1000
>UniRef50_UPI0000E4A461 Cluster: PREDICTED: similar to MGC69249
protein; n=2; Strongylocentrotus purpuratus|Rep:
PREDICTED: similar to MGC69249 protein -
Strongylocentrotus purpuratus
Length = 145
Score = 31.9 bits (69), Expect = 9.5
Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 2/106 (1%)
Frame = +1
Query: 178 VKYT-LAR-IRKAARELLTLEEKDPKRLFEGNAXXXXXXXXXXXDEKQMKLDYVLGLKIE 351
+KY L+R +R A ++ L+ KDP R + KQ L +
Sbjct: 1 MKYNKLSRHVRTLANKIKQLDSKDPFRNQCTSQMLKKLYNMGIVPTKQ-NLALCDNVSAS 59
Query: 352 DFLERRLQTQVFNAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 489
F RRL + +A+++ A ++ HIRV ++V P+F+V
Sbjct: 60 SFCRRRLPVVMVKIKMAETVESAVKFVQHGHIRVGPELVLDPAFLV 105
>UniRef50_A3X9S8 Cluster: Sensor protein; n=2; Roseobacter|Rep:
Sensor protein - Roseobacter sp. MED193
Length = 778
Score = 31.9 bits (69), Expect = 9.5
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = -1
Query: 267 IAFKQSLRILLLECQQFTGSLTDA-SERVLDAPHFTLVAETILSDDLQLL 121
I +Q +L+E +QF GS+ DA S R+L+A + + + S D +LL
Sbjct: 106 IIIEQDTNAVLIEVKQFVGSMVDAESLRILEATRASALMVSTFSADGELL 155
>UniRef50_A1VAB9 Cluster: DegT/DnrJ/EryC1/StrS aminotransferase;
n=2; Desulfovibrio vulgaris subsp. vulgaris|Rep:
DegT/DnrJ/EryC1/StrS aminotransferase - Desulfovibrio
vulgaris subsp. vulgaris (strain DP4)
Length = 392
Score = 31.9 bits (69), Expect = 9.5
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +1
Query: 109 ARLDQELKIIGEYGLRNKREVWRVKYTLA 195
A L Q ++++ YG+ + RE+W+ +YT A
Sbjct: 203 ADLAQRMRVLSMYGISDAREIWQKRYTRA 231
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 525,450,118
Number of Sequences: 1657284
Number of extensions: 10375830
Number of successful extensions: 29770
Number of sequences better than 10.0: 84
Number of HSP's better than 10.0 without gapping: 28863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29741
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 33873797511
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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