Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_F11
(531 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein S9|Schiz... 238 3e-64
SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein S9|Schiz... 238 4e-64
SPAC19D5.05c |||U3 snoRNP-associated protein Imp3 |Schizosacchar... 41 1e-04
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe... 29 0.57
SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1||... 27 1.7
SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated |Schizosaccharom... 26 3.0
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy... 26 4.0
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom... 26 4.0
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce... 25 7.0
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar... 25 9.3
>SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein
S9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 192
Score = 238 bits (583), Expect = 3e-64
Identities = 114/158 (72%), Positives = 128/158 (81%)
Frame = +1
Query: 58 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 237
P SKTY PRRPFE ARLD ELK+ GEYGLRNK E+WRV TL++IR+AARELLTL+E
Sbjct: 5 PRKQSKTYKVPRRPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDE 64
Query: 238 KDPKRLFEGNAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFNAGLAKSIHH 417
KDPKRLFEGNA DE +MKLDYVL L+IEDFLERRLQTQVF GLAKSIHH
Sbjct: 65 KDPKRLFEGNAIIRRLVRLGILDESRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHH 124
Query: 418 ARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKS 531
AR+LI QRHIRV KQ+VN+PSF+VRLD+ KHIDF+L S
Sbjct: 125 ARVLIFQRHIRVGKQIVNVPSFVVRLDAQKHIDFALSS 162
>SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein
S9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 191
Score = 238 bits (582), Expect = 4e-64
Identities = 114/158 (72%), Positives = 128/158 (81%)
Frame = +1
Query: 58 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 237
P SKTY PRRPFE ARLD ELK+ GEYGLRNK E+WRV TL++IR+AARELLTL+E
Sbjct: 5 PRKQSKTYKVPRRPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDE 64
Query: 238 KDPKRLFEGNAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFNAGLAKSIHH 417
KDPKRLFEGNA DE +MKLDYVL L+IEDFLERRLQTQVF GLAKSIHH
Sbjct: 65 KDPKRLFEGNAIIRRLVRLGILDETRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHH 124
Query: 418 ARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKS 531
AR+LI QRHIRV KQ+VN+PSF+VRLD+ KHIDF+L S
Sbjct: 125 ARVLIFQRHIRVGKQIVNVPSFVVRLDTQKHIDFALSS 162
>SPAC19D5.05c |||U3 snoRNP-associated protein Imp3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 183
Score = 40.7 bits (91), Expect = 1e-04
Identities = 26/123 (21%), Positives = 48/123 (39%)
Frame = +1
Query: 121 QELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNAXXXXXXXXXX 300
+++ ++ Y + + E + + R+ A L L+ DP RL N
Sbjct: 28 RDVMVMRRYHISKREEYQKYNIICGKFRQLAHRLSLLDPTDPFRLQYENLLLEKLFDMGI 87
Query: 301 XDEKQMKLDYVLGLKIEDFLERRLQTQVFNAGLAKSIHHARILIRQRHIRVRKQVVNIPS 480
K D + RRL + +++ + A LI Q H+RV V+ P+
Sbjct: 88 LPSKSKMSDIENKANVSAICRRRLPVIMCKLRMSQVVSEATRLIEQGHVRVGPHVITDPA 147
Query: 481 FIV 489
++V
Sbjct: 148 YLV 150
>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 527
Score = 28.7 bits (61), Expect = 0.57
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = -1
Query: 270 SIAFKQSLRILLLECQQFTGSLTDASERVLDAPHFTLVAETIL 142
SI F+ S RIL Q T LT S + HF ++ TIL
Sbjct: 18 SIFFQGSSRILTFFLNQLTIRLTSPSAYAFSSIHFEILQSTIL 60
>SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 393
Score = 27.1 bits (57), Expect = 1.7
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Frame = -1
Query: 372 KTALQEVLNLQTEHI-IQFHLFLIKHSDPNQTT**SIAFKQSLRILLLECQQFTGSLTDA 196
KT++ E+ N H+ +F ++K + Q QSL E FT SL
Sbjct: 187 KTSILEICNEMYVHLRTRFECRVMKKKNRTQWINIDEHLSQSLHATDTETHTFTDSLVVL 246
Query: 195 SERVLDAPHFTLVAETILSDDLQLL 121
+E V+D T +++ +L D + L
Sbjct: 247 NEVVIDRGPNTAMSDIMLYVDSKYL 271
>SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 26.2 bits (55), Expect = 3.0
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = +1
Query: 316 MKLDYVLGLKIEDFLERRLQTQVFNAGLAKSIHHARILIRQRHI 447
+++D L + +E FL++ TQ+ +A I + I Q H+
Sbjct: 132 VRMDGALWMAVEQFLQQEFDTQILPCLIAPEILLEFLKIWQNHV 175
>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 25.8 bits (54), Expect = 4.0
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = +1
Query: 361 ERRLQTQVFNAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLD 498
+ L+ V N H +R + ++R +VRK++ ++ I RLD
Sbjct: 17 QENLERDVTNTASEYIAHESREIEKKRLQKVRKEISSVKEKIRRLD 62
>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 703
Score = 25.8 bits (54), Expect = 4.0
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = -3
Query: 370 DGAPRSPQSSNRAHNPVSSVSHQALRP 290
DGA S Q+ AHNP +SVS + +RP
Sbjct: 90 DGA--SSQNDAFAHNPSTSVSVELVRP 114
>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 817
Score = 25.0 bits (52), Expect = 7.0
Identities = 13/53 (24%), Positives = 26/53 (49%)
Frame = +1
Query: 31 LAKMVNNRVPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYT 189
++K VN FS + +R + A +D + + E RN++ +++YT
Sbjct: 470 ISKKVNCLYVEAFSSSDAVLQRIQDNAVVDSPTEELSEQAARNRKSNVKIEYT 522
>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 24.6 bits (51), Expect = 9.3
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +3
Query: 405 VNPSCPHLDQTEAYSCPQAGGEHSFVHRPPGLRQAH*LLS 524
V+ + P +++ + P GG HS + RP R + LLS
Sbjct: 113 VSVNAPIVNEV-SLQAPMKGGSHSSIVRPQAKRSSSRLLS 151
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,114,247
Number of Sequences: 5004
Number of extensions: 40904
Number of successful extensions: 142
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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