Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_F10
         (430 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po...    28   0.53 
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz...    26   2.2  
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    26   2.9  
SPBC409.05 |skp1|psh1, sph1|SCF ubiquitin ligase complex subunit...    25   6.6  

>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 646

 Score = 28.3 bits (60), Expect = 0.53
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +1

Query: 76  IGHV-HSKSLLNLSCKQIKDFVNGHNYRRQLLAKGQV 183
           I H+ H KS L+    ++   +N HN+R Q L K +V
Sbjct: 64  IAHIDHGKSTLSDCILKLTGVINEHNFRNQFLDKLEV 100


>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 900

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 325 ENLYWYSTTDSTYKLNVDN 381
           +N YW  TTDS ++L V+N
Sbjct: 356 KNTYWLYTTDSLHELVVNN 374


>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
           subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +1

Query: 142 GHNYRRQLLAKGQVSGHPAATE 207
           G N+RRQLL  G+  G  AA+E
Sbjct: 854 GDNWRRQLLENGKSFGLEAASE 875


>SPBC409.05 |skp1|psh1, sph1|SCF ubiquitin ligase complex subunit
           Skp1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 161

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +1

Query: 34  MAVRALLILAMVVCIGHVHSKSLLNLSCKQIKDFVNG 144
           MAV   ++  +V+   ++  K LL+  CK + + + G
Sbjct: 91  MAVDQEMLFEIVLASNYLDIKPLLDTGCKTVANMIRG 127


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,798,355
Number of Sequences: 5004
Number of extensions: 33746
Number of successful extensions: 84
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)