Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_F08
(397 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0633 - 19123930-19124009,19124240-19124344,19124453-191245... 163 6e-41
09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841 163 6e-41
08_02_1315 + 26083856-26083945,26084093-26084226,26084753-260848... 136 5e-33
09_04_0630 + 19104678-19105463,19106169-19106348,19107775-191078... 126 5e-30
02_02_0355 + 9312814-9313650 30 0.78
11_06_0496 - 24325587-24326143,24326658-24327495,24327612-24327764 27 7.2
10_08_0371 + 17265691-17265788,17265873-17265971,17266586-172666... 27 7.2
09_06_0352 + 22472369-22472731,22472829-22472941,22473420-224742... 27 7.2
12_02_0388 - 18486957-18487016,18487286-18489418,18489985-184904... 26 9.6
11_03_0128 - 10437407-10438049,10438097-10438272 26 9.6
05_07_0112 - 27755604-27756449,27756624-27756887,27757428-277575... 26 9.6
04_01_0272 + 3624910-3625247,3625286-3625853,3625920-3626895,362... 26 9.6
>09_04_0633 -
19123930-19124009,19124240-19124344,19124453-19124543,
19124647-19124709,19126318-19126368,19126878-19126962,
19127102-19127283,19128493-19128582
Length = 248
Score = 163 bits (395), Expect = 6e-41
Identities = 78/114 (68%), Positives = 92/114 (80%)
Frame = +1
Query: 55 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 234
MA+ P+ IVKKR K+F R SDRY LK +WR+P+GID+RVRR+FKG LMPNIGYG
Sbjct: 1 MAV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPNIGYG 59
Query: 235 SNKKTRHMLPSGFRKVLVHNVRELEILMMQNRKYCAEIAHGVSSKKRKAIVERA 396
S+KKTRH LP+ F+K +VHNV ELE+LMM NR YCAEIAH VS+KKRK IVERA
Sbjct: 60 SDKKTRHYLPNKFKKFVVHNVSELELLMMHNRTYCAEIAHNVSTKKRKEIVERA 113
>09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841
Length = 133
Score = 163 bits (395), Expect = 6e-41
Identities = 78/114 (68%), Positives = 92/114 (80%)
Frame = +1
Query: 55 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 234
MA+ P+ IVKKR K+F R SDRY LK +WR+P+GID+RVRR+FKG LMPNIGYG
Sbjct: 1 MAV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPNIGYG 59
Query: 235 SNKKTRHMLPSGFRKVLVHNVRELEILMMQNRKYCAEIAHGVSSKKRKAIVERA 396
S+KKTRH LP+ F+K +VHNV ELE+LMM NR YCAEIAH VS+KKRK IVERA
Sbjct: 60 SDKKTRHYLPNKFKKFVVHNVSELELLMMHNRMYCAEIAHNVSTKKRKEIVERA 113
>08_02_1315 +
26083856-26083945,26084093-26084226,26084753-26084819,
26085011-26085192,26085315-26085444
Length = 200
Score = 136 bits (330), Expect = 5e-33
Identities = 61/82 (74%), Positives = 72/82 (87%)
Frame = +1
Query: 151 NWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPSGFRKVLVHNVRELEILMMQNR 330
+WR+P+GID+RVRR+FKG LMPNIGYGS+KKTRH LP+ F+K +VHNV ELE+LMM NR
Sbjct: 99 SWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNKFKKFVVHNVSELELLMMHNR 158
Query: 331 KYCAEIAHGVSSKKRKAIVERA 396
YCAEIAH VS+KKRK IVERA
Sbjct: 159 TYCAEIAHNVSTKKRKEIVERA 180
Score = 29.9 bits (64), Expect = 0.78
Identities = 17/31 (54%), Positives = 20/31 (64%)
Frame = +1
Query: 55 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLK 147
MA+ P+ IVKKR K+F R SDRY LK
Sbjct: 1 MAV-PLLTKKIVKKRVKQFKRPHSDRYLCLK 30
>09_04_0630 +
19104678-19105463,19106169-19106348,19107775-19107864,
19108777-19108958,19109968-19109974,19111763-19111833,
19112188-19112224,19112433-19112603
Length = 507
Score = 126 bits (305), Expect = 5e-30
Identities = 59/94 (62%), Positives = 74/94 (78%)
Frame = +1
Query: 49 FKMAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIG 228
++M + P+ IVKKR K+F R SDRY LK +WR+P+GID+RVRR+FKG LMPNIG
Sbjct: 321 YEMVV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPNIG 379
Query: 229 YGSNKKTRHMLPSGFRKVLVHNVRELEILMMQNR 330
YGS+KKTRH LP+ F+K +VHNV ELE+LMM NR
Sbjct: 380 YGSDKKTRHYLPNKFKKFVVHNVSELELLMMHNR 413
>02_02_0355 + 9312814-9313650
Length = 278
Score = 29.9 bits (64), Expect = 0.78
Identities = 18/59 (30%), Positives = 23/59 (38%)
Frame = +3
Query: 213 DAQHWLWFK*EDPSHATQRFS*SLGPQRSRTGDPDDAEQEILRGNRTWRLLEKTEGYSR 389
D+Q WL +D HA P+ GD D + E R R W EG+ R
Sbjct: 3 DSQQWLHGDGDDVEHAAAMTMTEAAPRDDEPGDRRDVDDENERRQRRW----TAEGFGR 57
>11_06_0496 - 24325587-24326143,24326658-24327495,24327612-24327764
Length = 515
Score = 26.6 bits (56), Expect = 7.2
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = -1
Query: 268 RWVACDGSSYLNHNQC 221
RW+ CDG S+ H C
Sbjct: 209 RWIGCDGCSHWTHAGC 224
>10_08_0371 +
17265691-17265788,17265873-17265971,17266586-17266628,
17267250-17267321,17267400-17267495,17267609-17267842,
17267914-17268097,17268247-17268358,17268447-17268533,
17268703-17268841,17269628-17269718,17270045-17270154,
17270309-17270413,17270982-17271055,17271379-17271454,
17271786-17272022,17272419-17272490,17273082-17273153,
17273240-17273304,17273306-17273383,17273384-17273486,
17273769-17273858,17274873-17274980,17275063-17275113,
17276126-17276203,17276284-17276346,17276944-17277140,
17277243-17277312,17277640-17277828
Length = 1030
Score = 26.6 bits (56), Expect = 7.2
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Frame = +2
Query: 170 VSTTEYVGASRVNT*-CPTLVMVQIRRPVTCYPAVFVKSW---STTFANWRS**CRTGNT 337
V+ T Y G + T C L+ +RR TC V + SW + FA+ RS TG
Sbjct: 607 VALTTYQGEIELQTLTCQKLLATVVRRKHTCTYVVQLDSWRDLTRAFASGRSLFSLTGRL 666
Query: 338 AR 343
R
Sbjct: 667 QR 668
>09_06_0352 + 22472369-22472731,22472829-22472941,22473420-22474226,
22474314-22474620,22474862-22475027,22475491-22475534,
22476019-22476161,22477900-22477937,22478032-22478129,
22478130-22478220,22478514-22478693,22479311-22479495,
22479583-22479678,22480151-22480297,22480763-22480864,
22480932-22481564
Length = 1170
Score = 26.6 bits (56), Expect = 7.2
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = -3
Query: 392 RSTIAFRFFEETPCAISAQYFLFCIIRISSSRTLW 288
R+T+AF+ F T A+ F+ I ++ S+ +LW
Sbjct: 900 RNTLAFKGFGRTNKETVAELFVSLISKLLSAESLW 934
>12_02_0388 -
18486957-18487016,18487286-18489418,18489985-18490484,
18490728-18490899
Length = 954
Score = 26.2 bits (55), Expect = 9.6
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +1
Query: 115 RHQSDRYDKLKRNWRKPRGIDN 180
R + D +++K W K RG+D+
Sbjct: 933 RFEDDELEEIKARWNKDRGLDS 954
>11_03_0128 - 10437407-10438049,10438097-10438272
Length = 272
Score = 26.2 bits (55), Expect = 9.6
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2
Query: 320 CRTGNTARKSHMASPRKNGR 379
C + TAR+ + SPRK GR
Sbjct: 163 CSSSTTARRISITSPRKRGR 182
>05_07_0112 -
27755604-27756449,27756624-27756887,27757428-27757532,
27757626-27758249,27759048-27759596,27759665-27760372,
27760449-27760658,27761266-27761421,27761524-27761664,
27762015-27762101,27762209-27762309,27763071-27763293,
27763384-27763548,27763621-27763713,27763801-27764292,
27764729-27764805,27765184-27765681,27765818-27766046
Length = 1855
Score = 26.2 bits (55), Expect = 9.6
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 214 MPNIGYGSNKKTRHMLPSGFRKVLVHNVRELE 309
M GYG+ +++RH L G K +V LE
Sbjct: 778 MKERGYGNRRRSRHRLTPGTVKFAAFHVLSLE 809
>04_01_0272 +
3624910-3625247,3625286-3625853,3625920-3626895,
3627053-3627087
Length = 638
Score = 26.2 bits (55), Expect = 9.6
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -2
Query: 216 HQVLTLEAPTYSVVDTSRFTPVPLK 142
HQ++ AP Y+ VD + P+PL+
Sbjct: 74 HQLVPFWAPFYTSVDQTTSPPIPLR 98
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,000,883
Number of Sequences: 37544
Number of extensions: 219875
Number of successful extensions: 604
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 684860244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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