Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_F08
         (397 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68338-1|CAA92757.1|  134|Caenorhabditis elegans Hypothetical pr...   144   2e-35
AL132848-1|CAB60388.2|  381|Caenorhabditis elegans Hypothetical ...    30   0.69 
U39645-5|AAU05591.1|  345|Caenorhabditis elegans Hypothetical pr...    28   2.8  
U39645-4|AAU05592.1|  341|Caenorhabditis elegans Hypothetical pr...    28   2.8  
AL117204-12|CAB55127.1|  385|Caenorhabditis elegans Hypothetical...    27   6.4  
U00040-4|AAM22034.1| 1139|Caenorhabditis elegans Hypothetical pr...    26   8.5  
AC024763-9|AAU20836.1|  404|Caenorhabditis elegans Hypothetical ...    26   8.5  
AC024763-8|AAK93863.1|  480|Caenorhabditis elegans Hypothetical ...    26   8.5  

>Z68338-1|CAA92757.1|  134|Caenorhabditis elegans Hypothetical
           protein T24B8.1 protein.
          Length = 134

 Score =  144 bits (350), Expect = 2e-35
 Identities = 62/104 (59%), Positives = 86/104 (82%)
 Frame = +1

Query: 85  IVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLP 264
           +VKK+  +F RH+SDRY ++  +WRKP+GIDNRVRRRF+G   MP IG+GS+++TR +LP
Sbjct: 11  VVKKKLTKFKRHESDRYRRVAPSWRKPKGIDNRVRRRFRGMRAMPTIGHGSDRRTRFVLP 70

Query: 265 SGFRKVLVHNVRELEILMMQNRKYCAEIAHGVSSKKRKAIVERA 396
           +G++KVLV NV++L++L+MQ+ KY  EI HGVS+K RK IVERA
Sbjct: 71  NGYKKVLVQNVKDLDMLLMQSYKYIGEIGHGVSAKSRKGIVERA 114


>AL132848-1|CAB60388.2|  381|Caenorhabditis elegans Hypothetical
           protein Y47H10A.2 protein.
          Length = 381

 Score = 29.9 bits (64), Expect = 0.69
 Identities = 17/41 (41%), Positives = 20/41 (48%)
 Frame = +1

Query: 205 QYLMPNIGYGSNKKTRHMLPSGFRKVLVHNVRELEILMMQN 327
           QYLM NI        R   PSGF K L+  +  L+I   QN
Sbjct: 213 QYLMNNIDLKYGLLIRCWHPSGFDKELLSGIPRLDIFYAQN 253


>U39645-5|AAU05591.1|  345|Caenorhabditis elegans Hypothetical
           protein C14F11.4a protein.
          Length = 345

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 24/111 (21%), Positives = 48/111 (43%), Gaps = 4/111 (3%)
 Frame = +1

Query: 73  YRPTIVKKRT--KRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKK 246
           Y P + KK    +RFI   ++R+D + RN   P     R  +  + Q L+ +  Y S+ +
Sbjct: 4   YPPLVTKKEIIYRRFIDDHNERFDNIVRN---PTSYPPRAPKPERPQNLVVSHNYHSDVE 60

Query: 247 TRHMLPSGFRKV--LVHNVRELEILMMQNRKYCAEIAHGVSSKKRKAIVER 393
             + L    +K+  ++  +R              ++A    +++ K I +R
Sbjct: 61  AEYQLSKINKKLDRIIEILRSPSTKKTSQEPPIIDVARQEQTRQYKDICDR 111


>U39645-4|AAU05592.1|  341|Caenorhabditis elegans Hypothetical
           protein C14F11.4b protein.
          Length = 341

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 24/111 (21%), Positives = 48/111 (43%), Gaps = 4/111 (3%)
 Frame = +1

Query: 73  YRPTIVKKRT--KRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKK 246
           Y P + KK    +RFI   ++R+D + RN   P     R  +  + Q L+ +  Y S+ +
Sbjct: 4   YPPLVTKKEIIYRRFIDDHNERFDNIVRN---PTSYPPRAPKPERPQNLVVSHNYHSDVE 60

Query: 247 TRHMLPSGFRKV--LVHNVRELEILMMQNRKYCAEIAHGVSSKKRKAIVER 393
             + L    +K+  ++  +R              ++A    +++ K I +R
Sbjct: 61  AEYQLSKINKKLDRIIEILRSPSTKKTSQEPPIIDVARQEQTRQYKDICDR 111


>AL117204-12|CAB55127.1|  385|Caenorhabditis elegans Hypothetical
           protein Y116A8C.21 protein.
          Length = 385

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = +2

Query: 206 NT*CPTLVMVQIRRPVTCYPAVFVKSWSTTFANWRS**CRTG 331
           N+ CP      IRRPV        +SWS T   W +  C+ G
Sbjct: 101 NSTCPAFPETDIRRPVN-------ESWSKTENGWTTRLCKNG 135


>U00040-4|AAM22034.1| 1139|Caenorhabditis elegans Hypothetical
           protein C18H2.5 protein.
          Length = 1139

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 229 YGSNKKTRHMLPSGFRKVLVHNVRELEILMMQNRKY 336
           +  NK+ +         +L H VREL+ L M+ RKY
Sbjct: 604 FNENKQVKEFWSGSPGYLLEHVVRELDNLNMEARKY 639


>AC024763-9|AAU20836.1|  404|Caenorhabditis elegans Hypothetical
           protein Y39A3CL.7b protein.
          Length = 404

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +1

Query: 58  AIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRR 192
           A RP  +P   K+R  RF+   S R+++     R P  + +R  R
Sbjct: 295 AERPA-KPNKEKERGDRFLPEPSRRFNRFNHRNRSPPSLSSRTSR 338


>AC024763-8|AAK93863.1|  480|Caenorhabditis elegans Hypothetical
           protein Y39A3CL.7a protein.
          Length = 480

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +1

Query: 58  AIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRR 192
           A RP  +P   K+R  RF+   S R+++     R P  + +R  R
Sbjct: 371 AERPA-KPNKEKERGDRFLPEPSRRFNRFNHRNRSPPSLSSRTSR 414


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,345,439
Number of Sequences: 27780
Number of extensions: 187701
Number of successful extensions: 521
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 609015246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)