Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_F08
         (397 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...   231   2e-63
DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.              26   0.14 
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   5.1  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   5.1  

>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score =  231 bits (565), Expect = 2e-63
 Identities = 105/114 (92%), Positives = 112/114 (98%)
 Frame = +1

Query: 55  MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 234
           MAIRPVYRPTIVKKRTK+FIRHQSDRY KLKRNWRKP+GIDNRVRRRFKGQYLMPNIGYG
Sbjct: 1   MAIRPVYRPTIVKKRTKKFIRHQSDRYSKLKRNWRKPKGIDNRVRRRFKGQYLMPNIGYG 60

Query: 235 SNKKTRHMLPSGFRKVLVHNVRELEILMMQNRKYCAEIAHGVSSKKRKAIVERA 396
           SNKKTRHMLP+GFRKVLVHNV+ELE+LMMQNRK+CAEIAHG SSKKRK+IVERA
Sbjct: 61  SNKKTRHMLPTGFRKVLVHNVKELEVLMMQNRKFCAEIAHGGSSKKRKSIVERA 114


>DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.
          Length = 135

 Score = 26.2 bits (55), Expect = 0.14
 Identities = 11/47 (23%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = -2

Query: 186 YSVVDTSR-FTPVPLKFIITIRLVTNKSFRPLFDDCRSVNRSDSHFK 49
           ++++D +  F P  +K ++ + L+   S + L  DC +++  + H K
Sbjct: 70  FNILDKNNVFKPQGIKAVMEL-LIDENSVKQLVSDCSTISEENPHLK 115


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +2

Query: 167 EVSTTEYVGASRVNT*CPTLVMVQIRRPVTCYPAVFVKS 283
           +++ T  V +S ++   P +VM+ I   + CY    VKS
Sbjct: 187 DLTPTYAVVSSSISFYVPCIVMLGIYCRLYCYAQKHVKS 225


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 13/61 (21%), Positives = 26/61 (42%)
 Frame = +1

Query: 211 LMPNIGYGSNKKTRHMLPSGFRKVLVHNVRELEILMMQNRKYCAEIAHGVSSKKRKAIVE 390
           L   +  G   + +  +P G+   +   + EL  L +  + +   + HG+    R  IV+
Sbjct: 66  LAAKVWNGQYARVQQSMPDGWETEISDQMLELRDLPISGKPFQIRMKHGLI---RDLIVD 122

Query: 391 R 393
           R
Sbjct: 123 R 123


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,902
Number of Sequences: 438
Number of extensions: 2394
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9761793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)