Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_F07
(578 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 332 3e-92
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 328 3e-91
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 136 2e-33
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 91 8e-20
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 28 0.86
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre... 26 3.5
SPBC2D10.16 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 3.5
SPBC1921.01c |rpl3701|rpl37-1, rpl37|60S ribosomal protein L37|S... 26 3.5
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 26 4.6
SPAC683.03 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 6.1
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb... 25 6.1
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 332 bits (815), Expect = 3e-92
Identities = 147/189 (77%), Positives = 169/189 (89%)
Frame = +2
Query: 11 NLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPV 190
NLDIERPTY NLNRLI Q+VSSITASLRF G+LNVDL EFQTNLVPYPRIHFPLVTY+P+
Sbjct: 220 NLDIERPTYENLNRLIAQVVSSITASLRFAGSLNVDLNEFQTNLVPYPRIHFPLVTYSPI 279
Query: 191 ISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATI 370
+SA KA+HE SV EITN CFEP NQMVKCDPR G+YMA C+LYRGDV+P+DV AA+ +I
Sbjct: 280 VSAAKAFHESNSVQEITNQCFEPYNQMVKCDPRTGRYMATCLLYRGDVIPRDVQAAVTSI 339
Query: 371 KTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIADAWARLEHKF 550
K++RTIQFVDWCPTGFK+GI Y+PP VPG +AKV RAVCMLSNTT+IA+AW+RL+HKF
Sbjct: 340 KSRRTIQFVDWCPTGFKIGICYEPPQHVPGSGIAKVNRAVCMLSNTTSIAEAWSRLDHKF 399
Query: 551 DLMYAKRAF 577
DLMY+KRAF
Sbjct: 400 DLMYSKRAF 408
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 328 bits (807), Expect = 3e-91
Identities = 146/189 (77%), Positives = 168/189 (88%)
Frame = +2
Query: 11 NLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPV 190
NLDIERP+Y NLNRLI Q+VSSITASLRF+G+LNVDL EFQTNLVPYPRIHFPLVTYAP+
Sbjct: 216 NLDIERPSYENLNRLIAQVVSSITASLRFEGSLNVDLAEFQTNLVPYPRIHFPLVTYAPI 275
Query: 191 ISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATI 370
+SA KA+HE SV EITN CFEP NQMVKCDPR G+YMA C+LYRGDV+P+DV AA+ TI
Sbjct: 276 VSAAKAFHESNSVQEITNQCFEPYNQMVKCDPRAGRYMATCLLYRGDVIPRDVQAAVTTI 335
Query: 371 KTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIADAWARLEHKF 550
K KRTIQFVDWCPTGFK+GI +PP + G ++AKV RAVCMLSNTT+IA+AW+RL+HKF
Sbjct: 336 KAKRTIQFVDWCPTGFKIGICDRPPQHIEGSEIAKVDRAVCMLSNTTSIAEAWSRLDHKF 395
Query: 551 DLMYAKRAF 577
DLMY+KRAF
Sbjct: 396 DLMYSKRAF 404
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 136 bits (330), Expect = 2e-33
Identities = 66/188 (35%), Positives = 109/188 (57%)
Frame = +2
Query: 14 LDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVI 193
L I+ P+Y +LN L+ +++ +T S RF G LN DL + N+VP+PR+HF +V +AP+
Sbjct: 215 LKIKSPSYDDLNHLVSAVMAGVTTSFRFPGELNSDLRKLAVNMVPFPRLHFFMVGFAPLA 274
Query: 194 SAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIK 373
+ + + +SV E+T F+ N MV DPRHG+Y+ L+RG V K+V+ I +++
Sbjct: 275 AIGSSSFQAVSVPELTQQMFDANNMMVAADPRHGRYLTVAALFRGKVSMKEVDEQIRSVQ 334
Query: 374 TKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIADAWARLEHKFD 553
TK + FV+W P + PP DL + + + N+T+I + + RL +F
Sbjct: 335 TKNSAYFVEWIPDNVLKAVCSVPPK-----DL---KMSATFIGNSTSIQEIFRRLGDQFS 386
Query: 554 LMYAKRAF 577
M+ ++AF
Sbjct: 387 AMFRRKAF 394
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 91.5 bits (217), Expect = 8e-20
Identities = 51/192 (26%), Positives = 98/192 (51%), Gaps = 4/192 (2%)
Frame = +2
Query: 14 LDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVI 193
L + PT+ N+L+ ++S+ T +LR+ G +N DL +L+P PR HF L +Y P
Sbjct: 218 LHTQNPTFHQQNQLVSTVMSASTTTLRYPGYMNNDLVSIIASLIPSPRCHFLLTSYTPFT 277
Query: 194 S---AEKAYHEQLSVAEITNACFEPANQMVKCDP-RHGKYMACCMLYRGDVVPKDVNAAI 361
+ E + +V ++ P NQMV +P + +++ + +G+ P DV+ ++
Sbjct: 278 NQQVEEAKAIRKTTVLDVMRRLLLPKNQMVSVNPSKKSCFISILDIIQGEADPADVHKSL 337
Query: 362 ATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIADAWARLE 541
I+ +R F+ W P +V ++ + P + ++ + ML+N T+IA + R
Sbjct: 338 LRIRERRYASFIPWGPASIQVALSKKSPYIKTNHRVSGL-----MLANHTSIASLFKRTL 392
Query: 542 HKFDLMYAKRAF 577
++D + + AF
Sbjct: 393 DQYDRLRKRNAF 404
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 28.3 bits (60), Expect = 0.86
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = +2
Query: 236 ITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAI 361
+ ACFEP N C H K C L + KD N ++
Sbjct: 361 LCGACFEPINAKCYCG-LHSKTYPCSSLPSPSISKKDENGSV 401
>SPBC19C2.09 |sre1||sterol regulatory element binding protein
Sre1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 900
Score = 26.2 bits (55), Expect = 3.5
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +3
Query: 417 SRSVSTTSPRPWCPAVISPRCNAPSACCPIPPLSPM 524
S SVS SP P SP +P++ IP SP+
Sbjct: 7 SVSVSVASPAMETPTKASPDSKSPNSVGAIPSSSPL 42
>SPBC2D10.16 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 135
Score = 26.2 bits (55), Expect = 3.5
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -2
Query: 115 DIEGAVETQRGGNR*YDLADKTIEVGVGRAFN 20
DIE E GN+ ++L +K I++ G+ FN
Sbjct: 58 DIEAFAEYALDGNKYFNLINKIIDMQDGKRFN 89
>SPBC1921.01c |rpl3701|rpl37-1, rpl37|60S ribosomal protein
L37|Schizosaccharomyces pombe|chr 2|||Manual
Length = 108
Score = 26.2 bits (55), Expect = 3.5
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +3
Query: 6 RVTWILNARPTPTSIVLSARSYHRLPP 86
RV W +RP S V+ AR H LPP
Sbjct: 66 RVIWGTVSRPHGNSGVVRARFTHNLPP 92
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 25.8 bits (54), Expect = 4.6
Identities = 13/21 (61%), Positives = 13/21 (61%)
Frame = +3
Query: 18 ILNARPTPTSIVLSARSYHRL 80
I NAR T V S RSYHRL
Sbjct: 1499 IKNARAKLTKAVKSLRSYHRL 1519
>SPAC683.03 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 105
Score = 25.4 bits (53), Expect = 6.1
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 496 VVQYHRYRRCLGSSRAQVRL 555
+VQY + RCL + R +VRL
Sbjct: 65 IVQYFKSLRCLRNGRTEVRL 84
>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1066
Score = 25.4 bits (53), Expect = 6.1
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2
Query: 367 GSDSRVDVLGHDVTAVQHAAGHVFAVT 287
G+D + GH V +Q A G VF+ T
Sbjct: 421 GADEKPKYAGHVVAVLQRAPGQVFSGT 447
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,334,747
Number of Sequences: 5004
Number of extensions: 47791
Number of successful extensions: 187
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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