Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_F06
         (373 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    20   7.1  
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    20   7.1  
AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    20   9.4  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          20   9.4  

>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 20.2 bits (40), Expect = 7.1
 Identities = 7/25 (28%), Positives = 11/25 (44%)
 Frame = -2

Query: 246 RDRSLVGWMSWPIAKFFVLFSNRGF 172
           R  S +GW  W + + + L     F
Sbjct: 563 RPISTLGWFFWSLLRIYELARKAAF 587


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 20.2 bits (40), Expect = 7.1
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +1

Query: 256 MAEIYSHPASKGCVTASSQSAAANQPVHPDIR*NHS 363
           +AE  + P   G   A++  +AA Q   PD    HS
Sbjct: 110 IAEGVAGPEKGGGAGAAASGSAAAQAGQPDNAIEHS 145


>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -3

Query: 203 SSLFSSRIEGLQSSWAQLSSPQVE 132
           S + S  I+  + +W+ L +PQ E
Sbjct: 35  SGINSQMIDYSRPNWSYLRTPQFE 58


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -3

Query: 203 SSLFSSRIEGLQSSWAQLSSPQVE 132
           S + S  I+  + +W+ L +PQ E
Sbjct: 55  SGINSQMIDYSRPNWSYLRTPQFE 78


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,838
Number of Sequences: 336
Number of extensions: 1629
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  7722305
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)