Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_F06
         (373 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal pro...   100   3e-22
AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal pro...   100   3e-22
AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical ...   100   4e-22
AC084159-5|AAM69075.1|  199|Caenorhabditis elegans Hypothetical ...    98   2e-21
Z74476-5|CAA98965.1|  325|Caenorhabditis elegans Hypothetical pr...    27   3.2  
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr...    26   9.9  
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re...    26   9.9  

>AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform a protein.
          Length = 265

 Score =  100 bits (240), Expect = 3e-22
 Identities = 43/63 (68%), Positives = 53/63 (84%)
 Frame = +2

Query: 179 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 358
           LFEKR +NF IGQDIQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF   LD  
Sbjct: 32  LFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSQ 91

Query: 359 TAK 367
           +A+
Sbjct: 92  SAR 94


>AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform c protein.
          Length = 245

 Score =  100 bits (240), Expect = 3e-22
 Identities = 43/63 (68%), Positives = 53/63 (84%)
 Frame = +2

Query: 179 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 358
           LFEKR +NF IGQDIQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF   LD  
Sbjct: 32  LFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSQ 91

Query: 359 TAK 367
           +A+
Sbjct: 92  SAR 94


>AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical
           protein Y73B3A.18a protein.
          Length = 234

 Score =  100 bits (239), Expect = 4e-22
 Identities = 43/63 (68%), Positives = 53/63 (84%)
 Frame = +2

Query: 179 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 358
           LFEKR +NF IGQDIQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF   LD  
Sbjct: 135 LFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSH 194

Query: 359 TAK 367
           +A+
Sbjct: 195 SAR 197


>AC084159-5|AAM69075.1|  199|Caenorhabditis elegans Hypothetical
           protein Y73B3A.18b protein.
          Length = 199

 Score = 98.3 bits (234), Expect = 2e-21
 Identities = 42/58 (72%), Positives = 50/58 (86%)
 Frame = +2

Query: 179 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 352
           LFEKR +NF IGQDIQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF   LD
Sbjct: 135 LFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 192


>Z74476-5|CAA98965.1|  325|Caenorhabditis elegans Hypothetical
           protein W05B10.5 protein.
          Length = 325

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
 Frame = -2

Query: 234 LVGWMSWPIAKF--FVLFSNRGFTIF 163
           LVGW +W I  F   +L SNR F +F
Sbjct: 97  LVGWFAWCIGPFSQVLLTSNRIFAVF 122


>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical
           protein F29D11.1 protein.
          Length = 4753

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 246 VSCDGRNIFASSVKRLCYSVVSKC 317
           V C  +N+F  +  R C+ V  KC
Sbjct: 136 VDCSSQNVFMCADGRQCFDVSKKC 159


>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL
           receptor-related protein protein.
          Length = 4753

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 246 VSCDGRNIFASSVKRLCYSVVSKC 317
           V C  +N+F  +  R C+ V  KC
Sbjct: 136 VDCSSQNVFMCADGRQCFDVSKKC 159


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,977,253
Number of Sequences: 27780
Number of extensions: 140212
Number of successful extensions: 336
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 336
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 535612900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)