Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_F05
         (350 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    25   4.5  
SPBC29A10.11c |vps902|vps9b|guanyl-nucleotide exchange factor Vp...    24   7.9  

>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 13/46 (28%), Positives = 19/46 (41%)
 Frame = -3

Query: 345  FVFFFTRD*VCSSTYGAEYRDIVIFDAFILTVNTVNLDSWYIMSLT 208
            +  FF R+   S T G +   +     F+   NT   D W I+  T
Sbjct: 1099 YYLFFNRNREKSLTKGIKRLSLSSQPTFVTESNTTEFDDWSILQNT 1144


>SPBC29A10.11c |vps902|vps9b|guanyl-nucleotide exchange factor
           Vps902 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 402

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 8/32 (25%), Positives = 19/32 (59%)
 Frame = +1

Query: 235 QIYCVNS*YESVKDDYISVFSSVSTTTDLVPC 330
           +I+C+++  ++ KDD +  F +     +L+ C
Sbjct: 129 RIFCLSTSTDAAKDDLLKKFIASEEKKELINC 160


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,231,241
Number of Sequences: 5004
Number of extensions: 19478
Number of successful extensions: 56
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)