Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_F05
         (350 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0454 + 3610608-3613136                                           29   1.0  
11_08_0026 + 27752519-27755441,27755538-27755923                       27   4.1  
07_03_0036 + 12694304-12694408,12694551-12694652,12694867-126949...    27   4.1  
03_05_0842 + 28110940-28111141,28111451-28111879,28112034-281128...    27   5.5  
11_08_0027 + 27775552-27775770,27776437-27778483,27778589-27778965     26   7.2  
11_08_0012 + 27623055-27623277,27623291-27625165,27625456-276255...    26   7.2  

>05_01_0454 + 3610608-3613136
          Length = 842

 Score = 29.1 bits (62), Expect = 1.0
 Identities = 14/53 (26%), Positives = 27/53 (50%)
 Frame = -3

Query: 348 FFVFFFTRD*VCSSTYGAEYRDIVIFDAFILTVNTVNLDSWYIMSLTRYRTFI 190
           FF F +    + SS +     D+V+ D F    N++++   Y +++TR R  +
Sbjct: 116 FFPFLYQSYDLASSKFKVSTEDVVLIDNFPQPSNSISVVMEYSLNITRDRLIL 168


>11_08_0026 + 27752519-27755441,27755538-27755923
          Length = 1102

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 151 TNLTFIDVNPGDFDKGPIPS*AHNVPAIQI 240
           TNLT + +    FD GPIP+   N+  + +
Sbjct: 324 TNLTILVLGMNHFDAGPIPASLSNLTMLSV 353


>07_03_0036 +
           12694304-12694408,12694551-12694652,12694867-12694947,
           12696475-12696525,12697308-12697473,12698759-12698877,
           12698975-12699073,12699684-12699764,12699845-12699927,
           12701177-12701402,12704272-12704439,12706408-12706800
          Length = 557

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -3

Query: 228 WYIMSLTRYRTFIEVSWIHVDESQIRPTVRYVLMIDG 118
           WY   L ++   IEV W++   S++ P V  +L++ G
Sbjct: 83  WYKKELCKFFGDIEVKWLNKHLSKLWPFVDQILVLLG 119


>03_05_0842 +
           28110940-28111141,28111451-28111879,28112034-28112806,
           28114046-28114237,28115116-28115277,28115395-28115861,
           28116339-28116384,28116639-28116647
          Length = 759

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 28/76 (36%), Positives = 35/76 (46%)
 Frame = +1

Query: 115 LAVNHQNVTDCRTNLTFIDVNPGDFDKGPIPS*AHNVPAIQIYCVNS*YESVKDDYISVF 294
           +A+NH    DC TN   +D N G  DK P+ S A  +P+ Q    N    S KDD     
Sbjct: 324 VAMNH---ADCNTNKQQVDTN-GGMDK-PVSSSAVCLPS-QGLSGNDQSLSAKDDGAPRR 377

Query: 295 SSVSTTTDLVPCKKKN 342
           S V        C+KKN
Sbjct: 378 SKVEK-----ECRKKN 388


>11_08_0027 + 27775552-27775770,27776437-27778483,27778589-27778965
          Length = 880

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 151 TNLTFIDVNPGDFDKGPIPS*AHNVPAIQI 240
           TNL  I +   +FD GPIP+   N+  + +
Sbjct: 106 TNLDAISLGGNNFDAGPIPTKLSNLTMLTV 135


>11_08_0012 +
           27623055-27623277,27623291-27625165,27625456-27625567,
           27625586-27626130,27626305-27626591,27626770-27626805
          Length = 1025

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 151 TNLTFIDVNPGDFDKGPIPS*AHNVPAIQI 240
           TNL  I +   +FD GPIP+   N+  + +
Sbjct: 316 TNLDAISLGGNNFDAGPIPTELSNLTMLTV 345


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,144,480
Number of Sequences: 37544
Number of extensions: 108510
Number of successful extensions: 240
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 518263348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)