Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_F05
         (350 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58746-1|AAB00621.2|  558|Caenorhabditis elegans Glutamate trans...    27   3.8  
Z81074-7|CAB03042.1|  495|Caenorhabditis elegans Hypothetical pr...    27   5.0  
Z81074-6|CAE46669.1|  475|Caenorhabditis elegans Hypothetical pr...    27   5.0  
Z48334-3|CAA88310.1|  471|Caenorhabditis elegans Hypothetical pr...    27   5.0  
U32275-1|AAA75370.1|  982|Caenorhabditis elegans serine-threonin...    26   6.6  
U11280-5|AAA19437.1|  982|Caenorhabditis elegans Protein kinase ...    26   6.6  
U11280-4|AAM97951.2|  353|Caenorhabditis elegans Protein kinase ...    26   6.6  

>U58746-1|AAB00621.2|  558|Caenorhabditis elegans Glutamate
           transporter family protein6 protein.
          Length = 558

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = +2

Query: 188 SIKVLYLVKLIMYQLSKFTVLTVNMKASKMTISLYSAP 301
           ++ V+++ +L   QLS   VLTV++ A+  +I L S P
Sbjct: 375 AVAVIFIAQLNNVQLSLAEVLTVSITATIASIGLGSVP 412


>Z81074-7|CAB03042.1|  495|Caenorhabditis elegans Hypothetical
           protein F32B6.8b protein.
          Length = 495

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +1

Query: 169 DVNPGDFDKGPIP-S*AHNVPAIQIYCVNS*YESVKDDY 282
           DV  G FD   +P      + A   +CV+S  +S++D+Y
Sbjct: 313 DVEVGSFDVSQLPLEQCQLIEADSFWCVSSLLDSIQDNY 351


>Z81074-6|CAE46669.1|  475|Caenorhabditis elegans Hypothetical
           protein F32B6.8a protein.
          Length = 475

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +1

Query: 169 DVNPGDFDKGPIP-S*AHNVPAIQIYCVNS*YESVKDDY 282
           DV  G FD   +P      + A   +CV+S  +S++D+Y
Sbjct: 293 DVEVGSFDVSQLPLEQCQLIEADSFWCVSSLLDSIQDNY 331


>Z48334-3|CAA88310.1|  471|Caenorhabditis elegans Hypothetical
           protein F10B5.3 protein.
          Length = 471

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -3

Query: 99  PLRTVRSGAHFNTSDVRLIHFELY 28
           P++   +G +F+T + R IHF  Y
Sbjct: 282 PIKCEENGCNFSTREARYIHFHKY 305


>U32275-1|AAA75370.1|  982|Caenorhabditis elegans serine-threonine
           kinase protein.
          Length = 982

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = +3

Query: 102 FIGETS-RQSSERNGLSDESDFH 167
           ++ ET  ++ SE NG SD+ DFH
Sbjct: 325 YLDETEGKEGSEGNGASDDLDFH 347


>U11280-5|AAA19437.1|  982|Caenorhabditis elegans Protein kinase
           protein 18, isoforma protein.
          Length = 982

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = +3

Query: 102 FIGETS-RQSSERNGLSDESDFH 167
           ++ ET  ++ SE NG SD+ DFH
Sbjct: 325 YLDETEGKEGSEGNGASDDLDFH 347


>U11280-4|AAM97951.2|  353|Caenorhabditis elegans Protein kinase
           protein 18, isoformb protein.
          Length = 353

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = +3

Query: 102 FIGETS-RQSSERNGLSDESDFH 167
           ++ ET  ++ SE NG SD+ DFH
Sbjct: 325 YLDETEGKEGSEGNGASDDLDFH 347


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,588,010
Number of Sequences: 27780
Number of extensions: 104484
Number of successful extensions: 248
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 248
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 472561672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)