Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_F05
         (350 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   1.4  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   3.2  
AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.          21   3.2  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   4.2  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    20   7.4  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    20   7.4  
DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    20   9.8  
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    20   9.8  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.6 bits (46), Expect = 1.4
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -3

Query: 261 ILTVNTVNLDSWYIMSLTRYRTFIE 187
           +LT++T++LDS   +   RY T ++
Sbjct: 284 VLTLSTISLDSRTDLPKVRYATALD 308


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 3.2
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +1

Query: 223 VPAIQIYCVNS*YESVKDDY 282
           VP +   CV S Y  +K+D+
Sbjct: 185 VPTVTSACVGSAYTPLKEDH 204


>AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.
          Length = 88

 Score = 21.4 bits (43), Expect = 3.2
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 246 TVNLDSWYIMSLTRYRTFIEVSWIHVDES 160
           T  ++ W  + +   R  +E +WIHVD S
Sbjct: 47  TFGVNKWSKVCIV-VRRKLEENWIHVDIS 74


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.0 bits (42), Expect = 4.2
 Identities = 16/52 (30%), Positives = 20/52 (38%)
 Frame = +1

Query: 190 DKGPIPS*AHNVPAIQIYCVNS*YESVKDDYISVFSSVSTTTDLVPCKKKNK 345
           +KGP+       P +   CV+   ES     ISV     T     P KK  K
Sbjct: 153 EKGPVALINELYPGVVYKCVSDNGESYAKFTISVTIDGETFEGTGPSKKLAK 204


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 20.2 bits (40), Expect = 7.4
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -1

Query: 80  PARISTRATLGLSIL 36
           PA    + TLG+SIL
Sbjct: 258 PAEAGEKVTLGISIL 272


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 20.2 bits (40), Expect = 7.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 100  SSSERLAVNHQNVTDCRTNLTFI 168
            S+   +A +  NVT+  TNLT I
Sbjct: 944  SAQSVVASSASNVTNVTTNLTTI 966


>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 19.8 bits (39), Expect = 9.8
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +3

Query: 87  LFVVEFIGETSRQSSERNGLSDE 155
           LF+     ET    S R+ +SDE
Sbjct: 14  LFIYTVTAETEEGQSGRSRVSDE 36


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 19.8 bits (39), Expect = 9.8
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +3

Query: 87  LFVVEFIGETSRQSSERNGLSDE 155
           LF+     ET    S R+ +SDE
Sbjct: 14  LFIYTVTAETEEGQSGRSRVSDE 36


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,116
Number of Sequences: 438
Number of extensions: 1422
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8060325
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)