Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_F04
(223 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC530.14c |dsk1||SR protein-specific kinase Dsk1|Schizosacchar... 26 0.59
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 25 1.0
SPAC17C9.02c |lys7||alpha-aminoadipate reductase phosphopantethe... 25 1.0
SPBC2G2.16 |||mannose-6-phosphate isomerase |Schizosaccharomyces... 24 2.4
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po... 24 2.4
SPAC23A1.02c |||phosphoprotein phosphatase |Schizosaccharomyces ... 24 2.4
SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase |Schizosac... 24 3.1
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 24 3.1
SPBC2D10.05 |exg3||glucan 1,3-beta-glucosidase Exg3|Schizosaccha... 23 4.1
SPBC800.11 |||inosine-uridine preferring nucleoside hydrolase |S... 23 4.1
SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb... 23 5.5
SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|ch... 23 5.5
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo... 23 5.5
SPAC57A10.10c |sla1||La protein homolog|Schizosaccharomyces pomb... 23 7.2
SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces pomb... 22 9.5
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb... 22 9.5
>SPBC530.14c |dsk1||SR protein-specific kinase
Dsk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 26.2 bits (55), Expect = 0.59
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 67 STGTISRSARTFANNTRKFYFPRGRIIPSRSWT 165
S ++ +TFA N K P G++IPS +T
Sbjct: 268 SVDNSAQERKTFAKNPTKNSKPAGQVIPSSPFT 300
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2244
Score = 25.4 bits (53), Expect = 1.0
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +1
Query: 151 SRSWTPSNASTLRSSIAFGHRDGH 222
S+ WTP N L SI DGH
Sbjct: 1824 SKDWTPFNGKKLYGSIQSVQFDGH 1847
>SPAC17C9.02c |lys7||alpha-aminoadipate reductase
phosphopantetheinyl transferase Lys7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 258
Score = 25.4 bits (53), Expect = 1.0
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -3
Query: 215 SRCPKAIDDLNVDAFDGVQLLEGIILP 135
+ CP I D NV + G+ ++ G LP
Sbjct: 86 AHCPPIIFDFNVSHYGGIVIVVGAWLP 112
>SPBC2G2.16 |||mannose-6-phosphate isomerase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 412
Score = 24.2 bits (50), Expect = 2.4
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +3
Query: 120 ILLSPGQDYSLQELDPIKCIHIKIVDCLRA 209
+ L PG+ L+ LDP + I++C+ A
Sbjct: 249 VRLHPGEAVFLRALDPHAYVSGNIIECMAA 278
>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 665
Score = 24.2 bits (50), Expect = 2.4
Identities = 15/57 (26%), Positives = 23/57 (40%)
Frame = +1
Query: 46 FSTTNLWSTGTISRSARTFANNTRKFYFPRGRIIPSRSWTPSNASTLRSSIAFGHRD 216
+S+ L T S T +++ +G S +WTPSN S + G D
Sbjct: 300 YSSKTLSKRDTSSHYPETLKASSKHSSPVKGNSSISSTWTPSNLKIYHSKNSMGLMD 356
>SPAC23A1.02c |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 430
Score = 24.2 bits (50), Expect = 2.4
Identities = 10/23 (43%), Positives = 11/23 (47%)
Frame = +1
Query: 40 RIFSTTNLWSTGTISRSARTFAN 108
+I N W G S ARTF N
Sbjct: 128 KITGAKNFWQVGNSSLPARTFEN 150
>SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 675
Score = 23.8 bits (49), Expect = 3.1
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 48 LNHQFMVHRDHF*ERPDLRQQHQEILLSPGQDYSL 152
LN + +V +HF P + + H +ILL Q Y L
Sbjct: 335 LNRKLIVGYNHFKHDPRVIRLHDKILLYNRQLYRL 369
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 23.8 bits (49), Expect = 3.1
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = +3
Query: 156 ELDPIKCIHIKIVDCLRAPGR 218
+LDP+ C H +VD G+
Sbjct: 371 QLDPVNCTHYLLVDLFSKYGK 391
>SPBC2D10.05 |exg3||glucan 1,3-beta-glucosidase
Exg3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 464
Score = 23.4 bits (48), Expect = 4.1
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = +1
Query: 154 RSWTPSNASTLRSSIAFGHRDG 219
R+WT +++ S+ A+ +RDG
Sbjct: 423 RAWTQKRMTSISSASAWEYRDG 444
>SPBC800.11 |||inosine-uridine preferring nucleoside hydrolase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 389
Score = 23.4 bits (48), Expect = 4.1
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = -1
Query: 220 ARPGARRQSTILMWMHLMGSSSWR 149
A+P R +T +W L GS W+
Sbjct: 88 AQPLLRTNNTFQIWQELYGSYVWQ 111
>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1095
Score = 23.0 bits (47), Expect = 5.5
Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Frame = +1
Query: 139 RIIPSRSWTPSNASTLR-SSIAFG 207
R+IPS+ W+ +A+ + SSIA G
Sbjct: 378 RLIPSQKWSERHAALMAISSIAEG 401
>SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 679
Score = 23.0 bits (47), Expect = 5.5
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +3
Query: 96 DLRQQHQEILLSPGQDYSLQELDPI 170
DLR++H E +++P +D +D I
Sbjct: 250 DLREKHAESIMTPIEDVFTLPMDRI 274
>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
Swi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 23.0 bits (47), Expect = 5.5
Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Frame = +3
Query: 87 ERPDLRQQHQEILLSP-GQDYSLQE 158
E+P QHQE LL+P G D E
Sbjct: 371 EQPLAESQHQEDLLNPYGVDQDFDE 395
>SPAC57A10.10c |sla1||La protein homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 298
Score = 22.6 bits (46), Expect = 7.2
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = -3
Query: 101 KVRALLEMVPVDHKLVVEK 45
KVR ++ +V VD+K V+E+
Sbjct: 136 KVRRMIPLVRVDNKSVMER 154
>SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 933
Score = 22.2 bits (45), Expect = 9.5
Identities = 8/19 (42%), Positives = 11/19 (57%)
Frame = -3
Query: 65 HKLVVEKIRQTSCLPWKMF 9
HKL +IR +C W +F
Sbjct: 257 HKLNEARIRNQACHVWSLF 275
>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 224
Score = 22.2 bits (45), Expect = 9.5
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +1
Query: 157 SWTPSNASTLRSS 195
SW P NAST+ +S
Sbjct: 84 SWQPGNASTMYAS 96
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 877,159
Number of Sequences: 5004
Number of extensions: 13094
Number of successful extensions: 48
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 53
effective length of database: 2,097,266
effective search space used: 41945320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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