Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_F04
         (223 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1458 - 27270834-27271320,27271752-27271961,27272627-272736...    29   0.51 
06_01_0361 - 2583296-2583652,2584269-2584461,2584725-2584978           27   2.7  
12_02_1147 - 26459481-26460124,26460241-26460382,26461658-264616...    26   3.6  
08_01_0388 + 3432177-3433154                                           26   3.6  
05_07_0066 + 27453611-27453627,27454729-27454872,27455998-274566...    26   3.6  
06_01_0049 - 438297-439709,440357-440401                               25   8.3  
01_06_1805 - 39999987-40000169,40000648-40000974,40001724-400020...    25   8.3  

>08_02_1458 - 27270834-27271320,27271752-27271961,27272627-27273624,
            27274099-27274195,27274278-27274393,27274465-27274590,
            27275123-27275233,27275347-27275428,27275844-27275989,
            27276457-27276650,27277277-27277388,27277869-27278001,
            27278295-27278437,27278488-27278562,27278830-27278937,
            27279072-27279197,27279752-27279836,27280358-27280440,
            27280545-27280625,27280709-27280789,27281960-27282034,
            27282112-27282498,27282902-27283036
          Length = 1396

 Score = 29.1 bits (62), Expect = 0.51
 Identities = 15/57 (26%), Positives = 24/57 (42%)
 Frame = +1

Query: 46   FSTTNLWSTGTISRSARTFANNTRKFYFPRGRIIPSRSWTPSNASTLRSSIAFGHRD 216
            F  +N+WST     +   F+NN          ++    +T       RSS++ GH D
Sbjct: 1138 FMASNMWSTTAYDVNTGGFSNNLHCLARCVSAVVGGSEYTRMEREHRRSSLSNGHMD 1194


>06_01_0361 - 2583296-2583652,2584269-2584461,2584725-2584978
          Length = 267

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 209 CPKAIDDLNVDAFDGVQLLEGIILPRGK 126
           CP+ + D  VDA + V   EG IL  G+
Sbjct: 187 CPQKVYDALVDALEHVSQYEGYILETGQ 214


>12_02_1147 -
           26459481-26460124,26460241-26460382,26461658-26461699,
           26463377-26463502
          Length = 317

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = +1

Query: 64  WSTGTISRSARTFANNTRKFYFPRGRIIPSRS 159
           W TG   R +   +   + F  P G  IP RS
Sbjct: 101 WGTGDTPRRSARISEKVKAFDSPEGEKIPKRS 132


>08_01_0388 + 3432177-3433154
          Length = 325

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +1

Query: 124 YFPRGRIIPSRSWTPSNASTLRSS 195
           Y PR R+I SRS   SN +T  SS
Sbjct: 10  YQPRARVIHSRSNANSNGATTASS 33


>05_07_0066 +
           27453611-27453627,27454729-27454872,27455998-27456690,
           27457700-27458111,27458220-27458297,27458938-27458953,
           27459038-27459192
          Length = 504

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +1

Query: 115 RKFYFPRGRIIPSRSWTPSNASTLRSSIAFGHRDG 219
           R+   P  +++P  S TPS +STLR + +   R G
Sbjct: 233 RRSSAPAEKLMPPPSTTPSRSSTLRVTSSLPARGG 267


>06_01_0049 - 438297-439709,440357-440401
          Length = 485

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +3

Query: 123 LLSPGQDYSLQELDPIKCIHIKIVDCLRAPG 215
           +L+P    +   ++P  C H++I DC    G
Sbjct: 237 ILAPTHSPNTDGINPDSCSHVRIEDCYIVSG 267


>01_06_1805 -
           39999987-40000169,40000648-40000974,40001724-40002017,
           40002112-40002231,40002714-40002776,40003150-40003310,
           40003864-40004035
          Length = 439

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/17 (64%), Positives = 11/17 (64%), Gaps = 1/17 (5%)
 Frame = +1

Query: 127 FPRGRIIPSRSW-TPSN 174
           FPRG  IPS  W  PSN
Sbjct: 234 FPRGSFIPSPRWQNPSN 250


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,260,654
Number of Sequences: 37544
Number of extensions: 96249
Number of successful extensions: 264
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 264
length of database: 14,793,348
effective HSP length: 53
effective length of database: 12,803,516
effective search space used: 256070320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)