Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_F04
         (223 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF040661-7|AAG24223.1|  439|Caenorhabditis elegans Hypothetical ...    28   0.78 
Z93390-5|CAJ76954.1|  219|Caenorhabditis elegans Hypothetical pr...    28   1.0  
Z93390-4|CAJ76953.1|  347|Caenorhabditis elegans Hypothetical pr...    28   1.0  
Z93390-3|CAB07676.1|  680|Caenorhabditis elegans Hypothetical pr...    28   1.0  
U58751-1|AAB00656.1|  577|Caenorhabditis elegans Pctaire class c...    26   3.1  
AF129110-1|AAD37120.1|  577|Caenorhabditis elegans Pct-1 protein.      26   3.1  
Z81130-5|CAB03420.1|  361|Caenorhabditis elegans Hypothetical pr...    26   4.2  
Z92837-3|CAB07402.3|  502|Caenorhabditis elegans Hypothetical pr...    25   7.3  
Z68302-8|CAA92632.2|  342|Caenorhabditis elegans Hypothetical pr...    25   9.6  
Z50794-2|CAA90657.2|  681|Caenorhabditis elegans Hypothetical pr...    25   9.6  

>AF040661-7|AAG24223.1|  439|Caenorhabditis elegans Hypothetical
           protein W10G11.17 protein.
          Length = 439

 Score = 28.3 bits (60), Expect = 0.78
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -3

Query: 221 CPSRCPKAIDDLNVDAFDGVQLLEGII 141
           C    PKAID+ N  +F+G++ +EG I
Sbjct: 375 CSEYVPKAIDEFNSSSFEGIE-IEGPI 400


>Z93390-5|CAJ76954.1|  219|Caenorhabditis elegans Hypothetical
           protein T23B5.1c protein.
          Length = 219

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +3

Query: 45  LLNHQFMVHRDHF*ERPDLRQQHQEILLSPGQDYSLQELDPIK 173
           +L H F   R HF  RPD    H ++ LS  + ++L+E+  I+
Sbjct: 77  ILGHLFYSDRVHFDARPD-PSAHCQVDLSTVRSFNLREMRDIR 118


>Z93390-4|CAJ76953.1|  347|Caenorhabditis elegans Hypothetical
           protein T23B5.1b protein.
          Length = 347

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +3

Query: 45  LLNHQFMVHRDHF*ERPDLRQQHQEILLSPGQDYSLQELDPIK 173
           +L H F   R HF  RPD    H ++ LS  + ++L+E+  I+
Sbjct: 205 ILGHLFYSDRVHFDARPD-PSAHCQVDLSTVRSFNLREMRDIR 246


>Z93390-3|CAB07676.1|  680|Caenorhabditis elegans Hypothetical
           protein T23B5.1a protein.
          Length = 680

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +3

Query: 45  LLNHQFMVHRDHF*ERPDLRQQHQEILLSPGQDYSLQELDPIK 173
           +L H F   R HF  RPD    H ++ LS  + ++L+E+  I+
Sbjct: 538 ILGHLFYSDRVHFDARPD-PSAHCQVDLSTVRSFNLREMRDIR 579


>U58751-1|AAB00656.1|  577|Caenorhabditis elegans Pctaire class cell
           cycle kinaseprotein 1, isoform a protein.
          Length = 577

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 112 TRKFYFPRGRIIPSRSWTPSNASTLRSSIAFG 207
           T   Y+PRG      S+  SNAS ++ S+  G
Sbjct: 114 THSLYYPRGYNSRRNSYYGSNASVVQESMILG 145


>AF129110-1|AAD37120.1|  577|Caenorhabditis elegans Pct-1 protein.
          Length = 577

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 112 TRKFYFPRGRIIPSRSWTPSNASTLRSSIAFG 207
           T   Y+PRG      S+  SNAS ++ S+  G
Sbjct: 114 THSLYYPRGYNSRRNSYYGSNASVVQESMILG 145


>Z81130-5|CAB03420.1|  361|Caenorhabditis elegans Hypothetical
           protein T23G11.7a protein.
          Length = 361

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 15/47 (31%), Positives = 19/47 (40%)
 Frame = +1

Query: 55  TNLWSTGTISRSARTFANNTRKFYFPRGRIIPSRSWTPSNASTLRSS 195
           TNL     I + +  F     K    R ++I   SW   N S LR S
Sbjct: 260 TNLQIINPIDQKSSIFTEKCWKKKADREKLIEGMSWLSKNISHLRES 306


>Z92837-3|CAB07402.3|  502|Caenorhabditis elegans Hypothetical
           protein R03E1.3 protein.
          Length = 502

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
 Frame = +1

Query: 1   ARGNIFH---GRHDV*RIFSTTNLWSTGTIS 84
           ARGN +H   G      ++ST  +WSTGT S
Sbjct: 118 ARGNSWHLYMGAMPA-TVYSTGKVWSTGTFS 147


>Z68302-8|CAA92632.2|  342|Caenorhabditis elegans Hypothetical
          protein ZK792.7 protein.
          Length = 342

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -1

Query: 58 WWLRRSVRHHAFHGRCSLV 2
          WWL R    H  +GRC  +
Sbjct: 32 WWLSRQWPEHEENGRCDRI 50


>Z50794-2|CAA90657.2|  681|Caenorhabditis elegans Hypothetical
           protein F59F5.3 protein.
          Length = 681

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -3

Query: 218 PSRCPKAIDDLNVDAFD 168
           P  CPKAI DL VD  +
Sbjct: 605 PENCPKAIYDLIVDCIN 621


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,979,344
Number of Sequences: 27780
Number of extensions: 75619
Number of successful extensions: 231
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 12,740,198
effective HSP length: 53
effective length of database: 11,267,858
effective search space used: 225357160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)