Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_F04
         (223 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   0.44 
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   2.4  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    20   3.1  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    20   4.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              19   5.5  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          19   9.5  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      19   9.5  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    19   9.5  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    19   9.5  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    19   9.5  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.0 bits (47), Expect = 0.44
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = +1

Query: 49  STTNLWSTGTISRSARTFANNTRKFYFPRGRIIPSRS 159
           ST +L +TG +S       +N  +   PR  ++ + S
Sbjct: 713 STQSLTTTGNVSYLTTNNTSNNSQLQIPRASLVSTTS 749


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 20.6 bits (41), Expect = 2.4
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +3

Query: 132 PGQDYSLQELD 164
           PG DYSL E++
Sbjct: 20  PGGDYSLDEIE 30



 Score = 19.0 bits (37), Expect = 7.2
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +1

Query: 79   ISRSARTFANNTR 117
            +SRS +T ANN +
Sbjct: 988  VSRSTQTSANNDK 1000


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
          finger domain-Z1 isoform protein.
          Length = 111

 Score = 20.2 bits (40), Expect = 3.1
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +3

Query: 36 LTDLLNHQFMVHRDH 80
          L  L NH+ + HR H
Sbjct: 45 LNSLRNHKSIYHRQH 59


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 19.8 bits (39), Expect = 4.1
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 100 FANNTRKFYFPRGRIIPSRSW 162
           FAN  +KFY  RG ++    W
Sbjct: 310 FANKNQKFY-ERGIMMLPERW 329


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 19.4 bits (38), Expect = 5.5
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +3

Query: 87  ERPDLRQQHQEILLSPGQDYSLQ 155
           E P +RQ   E  L PG    L+
Sbjct: 392 EPPQIRQAFAEETLQPGPSMFLK 414


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 18.6 bits (36), Expect = 9.5
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -3

Query: 152 EGIILPRGK 126
           E +ILPRGK
Sbjct: 604 ERLILPRGK 612


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 18.6 bits (36), Expect = 9.5
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -3

Query: 152 EGIILPRGK 126
           E +ILPRGK
Sbjct: 604 ERLILPRGK 612


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 18.6 bits (36), Expect = 9.5
 Identities = 7/17 (41%), Positives = 8/17 (47%)
 Frame = +1

Query: 157 SWTPSNASTLRSSIAFG 207
           +W P N   LR    FG
Sbjct: 341 NWVPGNHDQLRLVSRFG 357


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 18.6 bits (36), Expect = 9.5
 Identities = 6/23 (26%), Positives = 12/23 (52%)
 Frame = -3

Query: 86  LEMVPVDHKLVVEKIRQTSCLPW 18
           L  + +D +  + K+R  + L W
Sbjct: 287 LSTISLDSRTDLPKVRYATALDW 309


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 18.6 bits (36), Expect = 9.5
 Identities = 7/17 (41%), Positives = 8/17 (47%)
 Frame = +1

Query: 157 SWTPSNASTLRSSIAFG 207
           +W P N   LR    FG
Sbjct: 341 NWVPGNHDQLRLVSRFG 357


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 60,259
Number of Sequences: 438
Number of extensions: 1053
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 46
effective length of database: 126,195
effective search space used:  3407265
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)