Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_F03
         (304 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    22   1.2  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    22   1.2  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    22   1.6  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    21   2.8  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    21   2.8  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    21   3.8  
DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    20   5.0  

>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 1.2
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +1

Query: 25  HSATKTGDHRCTAPICD 75
           H  T TG+ R   PIC+
Sbjct: 365 HLRTHTGEKRFACPICN 381


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 22.2 bits (45), Expect = 1.2
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +2

Query: 32  PPKPEIIDVPRLSVTPPVIIPILANSAAPAETS 130
           PP P++  +P     PP+  P + N +A  E++
Sbjct: 175 PPLPQVPPLP----LPPIFPPTMINPSAICESA 203


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 21.8 bits (44), Expect = 1.6
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 54  SMISGFGGAVIGSPRPS 4
           S+ SG GG + G P P+
Sbjct: 82  SLSSGLGGGLSGMPMPA 98



 Score = 19.8 bits (39), Expect = 6.6
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +2

Query: 8   GLGEPITAPPKPEI 49
           GLG P+ + P P++
Sbjct: 102 GLGHPLESVPFPQV 115


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.0 bits (42), Expect = 2.8
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +2

Query: 65  LSVTPPVIIPIL 100
           LS+ PP++IP L
Sbjct: 558 LSIGPPLVIPFL 569


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.0 bits (42), Expect = 2.8
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +2

Query: 65  LSVTPPVIIPIL 100
           LS+ PP++IP L
Sbjct: 558 LSIGPPLVIPFL 569


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 20.6 bits (41), Expect = 3.8
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +3

Query: 90  YRSWQTVLHRR 122
           YR WQTV + R
Sbjct: 525 YRPWQTVYNHR 535


>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 20.2 bits (40), Expect = 5.0
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +2

Query: 86  IIPILANSAAPAETSDS 136
           I  ILA SAAPAE  +S
Sbjct: 7   IAGILAVSAAPAEFYES 23


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 46,272
Number of Sequences: 336
Number of extensions: 720
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 49
effective length of database: 106,121
effective search space used:  5412171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)