Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_F03
         (304 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dp...    26   1.1  
SPBC887.10 |mcs4||two-component response regulator |Schizosaccha...    24   4.3  
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc...    24   4.3  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    24   5.6  
SPBC16A3.09c |ufd1||Cdc48-Ufd1-Npl4 complex component Ufd1 |Schi...    23   7.5  
SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc...    23   7.5  
SPCC1682.09c |||guanine nucleotide transporter|Schizosaccharomyc...    23   9.9  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    23   9.9  

>SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dpb2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 594

 Score = 26.2 bits (55), Expect = 1.1
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 71  VTPPVIIPILANSAAPAETSDSDAASLK 154
           VT P++IP+LAN   P E   S  A ++
Sbjct: 86  VTRPLLIPVLANLNVPHEVRVSSLARVQ 113


>SPBC887.10 |mcs4||two-component response regulator
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 522

 Score = 24.2 bits (50), Expect = 4.3
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +2

Query: 8   GLGEPITAPPKPEIIDVPRLSVTPPVIIPILANSAAPAETSDSDAA 145
           G+G P    P PE   +       PVII  L  S+  A+ +++ AA
Sbjct: 437 GVGAPKLTQPIPEKDQLNENKFQSPVIIVALTASSLMADRNEALAA 482


>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 791

 Score = 24.2 bits (50), Expect = 4.3
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
 Frame = +2

Query: 50  IDVPRLSVTPPVIIPILANS-----AAPAETSDSDAASL 151
           IDV    VTPP+ +  + +S     A PA  +D+D  S+
Sbjct: 196 IDVQTNIVTPPITVTAVPDSPNPPAATPATVADNDDLSI 234


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 23.8 bits (49), Expect = 5.6
 Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
 Frame = +2

Query: 20   PITAPP--KPEII--DVPRLSVTPPVIIPILANSAAPAETS 130
            P  APP  KP +    VP  S  PPV  P +A    PA +S
Sbjct: 1136 PSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSS 1176


>SPBC16A3.09c |ufd1||Cdc48-Ufd1-Npl4 complex component Ufd1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 342

 Score = 23.4 bits (48), Expect = 7.5
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = +2

Query: 14  GEPITAPPKPEIIDVPRLSVTPPVIIPI 97
           G+ +   PK  ++DV +     P+I+P+
Sbjct: 258 GKEVAEVPKINLLDVEKQECPAPLILPL 285


>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 23.4 bits (48), Expect = 7.5
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 26  TAPPKPEIIDVPRLSVTPPVIIPIL 100
           TA   PEI  VP ++VT   ++P L
Sbjct: 502 TATLLPEITFVPSITVTTHYVLPTL 526


>SPCC1682.09c |||guanine nucleotide transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 300

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 153 FRDAASESLVSAGAALFAKIG 91
           FRDAAS  L+    +LF  +G
Sbjct: 58  FRDAASAPLLQKATSLFPGLG 78


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 17  EPITAPPKPEIIDVPRLSVTPPV 85
           +P  AP  PE+  VP+  V P V
Sbjct: 576 QPPVAPVAPEVPSVPQPPVAPVV 598


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 799,871
Number of Sequences: 5004
Number of extensions: 11667
Number of successful extensions: 47
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 75747362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)