Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_F02
         (142 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      21   1.5  
X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.          19   4.6  
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    19   4.6  
AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.           19   4.6  
AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory recept...    19   6.0  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    18   8.0  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           18   8.0  

>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 20.6 bits (41), Expect = 1.5
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -1

Query: 88  YDHCQNKKRAYGHCSVVCYHERYTKY 11
           +D    + RA+ HCSV     +  KY
Sbjct: 82  FDWVYYESRAHIHCSVKSESSQAAKY 107


>X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.
          Length = 251

 Score = 19.0 bits (37), Expect = 4.6
 Identities = 6/24 (25%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
 Frame = -1

Query: 112 FTMDVSNTYDHCQNKKRAY-GHCS 44
           ++  + N+Y  C N + ++   CS
Sbjct: 198 YSQTIDNSYQFCDNLQYSFDNQCS 221


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
          protein.
          Length = 475

 Score = 19.0 bits (37), Expect = 4.6
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -1

Query: 43 VVCYHERYTKYCL 5
          VVCYH  ++ Y L
Sbjct: 22 VVCYHGIWSTYRL 34


>AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.
          Length = 246

 Score = 19.0 bits (37), Expect = 4.6
 Identities = 6/24 (25%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
 Frame = -1

Query: 112 FTMDVSNTYDHCQNKKRAY-GHCS 44
           ++  + N+Y  C N + ++   CS
Sbjct: 189 YSQTIDNSYQFCDNLQYSFDNQCS 212


>AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory receptor
           candidate 42 protein.
          Length = 347

 Score = 18.6 bits (36), Expect = 6.0
 Identities = 9/34 (26%), Positives = 16/34 (47%)
 Frame = -3

Query: 140 FVCMTSLVEIYYGRVQYIRPLPK*EARVRPLFSC 39
           F C T L  +   R QY + + K     + +++C
Sbjct: 76  FSCYTVLAPVLCKRQQYCQLMSKLLGNHQLVYNC 109


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 18.2 bits (35), Expect = 8.0
 Identities = 6/16 (37%), Positives = 9/16 (56%)
 Frame = -3

Query: 65  ARVRPLFSCMLPRTIH 18
           +   P+   MLP T+H
Sbjct: 362 SHAHPMHHDMLPETMH 377


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 18.2 bits (35), Expect = 8.0
 Identities = 6/16 (37%), Positives = 9/16 (56%)
 Frame = -3

Query: 65  ARVRPLFSCMLPRTIH 18
           +   P+   MLP T+H
Sbjct: 362 SHAHPMHHDMLPETMH 377


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,207
Number of Sequences: 336
Number of extensions: 518
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 27
effective length of database: 113,513
effective search space used:  2156747
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 34 (18.5 bits)