Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_F02
         (142 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo...    23   7.3  
SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|...    23   7.3  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    23   7.3  
SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase ...    22   9.6  
SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr...    22   9.6  
SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|...    22   9.6  
SPAC24H6.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    22   9.6  

>SPBC18A7.02c |||seven transmembrane receptor-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +3

Query: 21  YRSW*HTTEQWPYARFLFWQWSY 89
           Y  W H+ +  PY   + WQ +Y
Sbjct: 141 YCIWSHSKKMLPYQALVNWQNAY 163


>SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 595

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -2

Query: 138 CLHDKFSRDLLWTCPIHTTIAK 73
           C  +    DL++TC I  T+ K
Sbjct: 358 CFAENVQGDLIFTCEISLTVLK 379


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = -1

Query: 88   YDHCQNKKRAYGHCSVVCYHERYTKYCLV 2
            Y H QN ++ +G CS V   +     C +
Sbjct: 1248 YAHSQNAEKIFGICSKVVKDQEVNIPCFL 1276


>SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 423

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -1

Query: 103 DVSNTYDHCQNKKRAYGHCSVV 38
           D  +    C N  R YGH S++
Sbjct: 319 DSPDMITECLNAVRKYGHVSII 340


>SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 808

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +1

Query: 70  YFGNGRMYWTRP 105
           YFG G  YW  P
Sbjct: 712 YFGTGENYWRGP 723


>SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 700

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 8/26 (30%), Positives = 11/26 (42%)
 Frame = -1

Query: 112 FTMDVSNTYDHCQNKKRAYGHCSVVC 35
           F + +S   D C      Y  C +VC
Sbjct: 354 FFLPLSGGLDSCSTAVLVYSMCRIVC 379


>SPAC24H6.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 220

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -2

Query: 33  TTNDTLNTASC 1
           TTND +N ASC
Sbjct: 113 TTNDCMNEASC 123


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 614,701
Number of Sequences: 5004
Number of extensions: 8232
Number of successful extensions: 20
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 2,362,478
effective HSP length: 27
effective length of database: 2,227,370
effective search space used: 42320030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)